AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fso1g02214 ATGCTCAACATCTTCAACAAAAACCTCCGGCGACTCTGCTCAAAGCTCCGGTGGCCGGTGCGCCGCCGTGCAAAGCCCAAAGTCATCATCAAAAGATTCGGAAGATCAAATTCAAGAAATCAAGATTCTGTAAACACAAATGGGTCAGCCACAATTCACCCAAATAACCATTTGGGTGTTCAAAAATCAGAAAACCCAATTCGAATTGCAACATTTAATGCTGCTTTATTCTCCATGGCGCCAGCAGTTCCAGAGTTGACCAAAAAAGCATCAAGCTTTGACCATGGCGATGATGATGATGATCACACAAAGGTAGATTCCAATTCCTCTGTTTCTTACAGTACTTCAAGGTCAAAATCAATGGTTGATCGACCCAAAAGTATATTGAAACAATCACCATTACATTCAAGCTCAATGAGGAGTTCAGAAGCTTTATCAAAACAGCAGAAATTCGCAAAGTCAAAGCTAAGAGTATCGATAAACTTACCTGATAATGAGATCTCATTGAAAAGAAGTGGGCAATTGAGCTTTGTTACCGACGAAAAAGAACCCGACCCGGGTTCAAGAACAAGTAGTTCTAAGGGAATTAGCAAGATTTTGAAAGGGAAAGGTGTTTTGAGATCACAAAACAGTGTTTCTTTAAGGGAAGTTGAAAGTCAAAGGGGGACTTATAGGTCAACGAAGACTGTTCTTGAGGTTTTGAAAGAATTGAATGCTGATATATTGGCTTTACAAGATGTGAAAGCTGAAGAAGAGAAAGATATGAAACCATTGTCTGATCTTGCTGCTGCTTTGGGTATGAATTATGTGTTTGCTGAGAGTTGGGCACCCGAATATGGTAACGCGGTGTTGTCGAAGTGGCCGATCAAACGATCGAAGGTTCAGAAAATTTTTGATGATTCTGACTTCAGGAATGTTTTAAAGGCGACCATTGATGTTCCACAAACCGGAGAAGTTGATTTTCATTGTACCCTTCTTGATCATCTTGATGAAAATTGGCGAATGAAGCAAATAAAAGCAATCATTGAATCTAATGAGAGACCACACATCTTAGCTGGAGGTATCAACTCTCTTGATGAAACAGATTACTCGCCCGAAAGATGGACAGACATTGTTAAGTACTATGAGGAAATGGGAAAACCGACACCAAAAGTTGAAGTGATGAAGTACTTAAAGAGCAAACAGTACACTGATGCTAAGGATTTTGCAGGCGAATGTGAATCTGTAGTCATTATCGCTAAAGGCCAAAATGTGCAGGGTACATGCAAATATGGTACTAGGGTAGATTATATATTGGTGTCGCCCGATTCACCTTACAAGTTTGTTCCTGGTTCATATATGGTTTTATCATCAAAAGGTCATGGATCGAGACTGTCCCCTCCATGA 1386 40.19 MLNIFNKNLRRLCSKLRWPVRRRAKPKVIIKRFGRSNSRNQDSVNTNGSATIHPNNHLGVQKSENPIRIATFNAALFSMAPAVPELTKKASSFDHGDDDDDHTKVDSNSSVSYSTSRSKSMVDRPKSILKQSPLHSSSMRSSEALSKQQKFAKSKLRVSINLPDNEISLKRSGQLSFVTDEKEPDPGSRTSSSKGISKILKGKGVLRSQNSVSLREVESQRGTYRSTKTVLEVLKELNADILALQDVKAEEEKDMKPLSDLAAALGMNYVFAESWAPEYGNAVLSKWPIKRSKVQKIFDDSDFRNVLKATIDVPQTGEVDFHCTLLDHLDENWRMKQIKAIIESNERPHILAGGINSLDETDYSPERWTDIVKYYEEMGKPTPKVEVMKYLKSKQYTDAKDFAGECESVVIIAKGQNVQGTCKYGTRVDYILVSPDSPYKFVPGSYMVLSSKGHGSRLSPP 461
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fso1g02214 461 Pfam Endonuclease-Exonuclease-phosphatase family 222 436 IPR005135 GO:0003824(InterPro)
Fso1g02214 461 PANTHER CALCOFLUOR WHITE HYPERSENSITIVE PROTEIN PRECURSOR 14 453 IPR051916 GO:0005783(PANTHER)|GO:0006506(PANTHER)
Fso1g02214 461 MobiDBLite consensus disorder prediction 90 106 - -
Fso1g02214 461 Gene3D Endonuclease-exonuclease-phosphatase 210 455 IPR036691 -
Fso1g02214 461 MobiDBLite consensus disorder prediction 90 148 - -
Fso1g02214 461 Coils Coil 234 254 - -
Fso1g02214 461 MobiDBLite consensus disorder prediction 107 122 - -
Fso1g02214 461 FunFam Endonuclease-exonuclease-phosphatase family protein 215 457 - -
Fso1g02214 461 MobiDBLite consensus disorder prediction 36 59 - -
Fso1g02214 461 MobiDBLite consensus disorder prediction 173 196 - -
Fso1g02214 461 MobiDBLite consensus disorder prediction 130 148 - -
Fso1g02214 461 SUPERFAMILY DNase I-like 228 451 IPR036691 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fso1g02214 - -
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
398654 Fso12g01934 Fso1g02214
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fso Fso-Chr11:6604627 Fso1g02214 Fso-Chr1:62969910 dispersed
Fso Fso-Chr1:62969910 Fso12g01934 Fso-Chr12:57862046 wgd