AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fso1g02223 ATGGAGTCACCTCAGGCACACATGCGTTCAATCAAGCTATGGCCACCGAACCACACCACCCGCGTACTTCTCGTTAATCGAATCATAAAATGCTTCACAACCCCATCAATTTTGACAAGAAAGTACGGTCTTTTAAGCAAAGAAGAAGCAGAGGAAGAAGCTAAACAAATCGAATCTGCAGGCTTTATTGCAGCATCCCATCAATTCGAAAAAGACCCCGAAAGCGACGGTGGATCCGCTGTTCAAGTTTACGCGAAAGAATCGAGTAAATTGATGGTGGAATTCATCAAAACAGGGCACAAACCGAAGGAATCCATGCCCGAATTGACCAAATCGGATCATGTTTTCGATATTTCAGGCGGTCGTCGGGCGTTTATCGAAGCTGAAGAGGCGAAAGAGCTGTTGAAACCGTTGAAAGAGCCCGGGAACAACTTTACAAAGATATGTTTTAGTAACCGAAGTTTTGGGTTGCCTGCGGCCCATGTCGCTGCATTGGTGTTATCGGGTGTTAAAGATCAGTTAACCGAGGTCGATTTATCGGACATTGTATCGAGGAGGCCCGAGCCCGAGGCCGTTGAGGTTATGAAGATGTTTGCATCGGCTCTTGAGGGTTGTAAGTTGAGTTATTTGAATTTGTCTAACAATGTGTTGAATGAGAAAGGGGTTAGGGCATTTGGTGATCTTTTGAGGTCTCAAGGTGGTCTTGTGGAGTTGCATTTGATGAATGCTGGGATCTCGCCCGAAGCCGCAAAGGCGGTATGTGAGTTGATTCGGGCGACGGAGAAACTTAAGGTTCTTCATTTTCATCATAATAGGATGGGAGATGAAGGTGCGCTCGCCATTTCTCAACTGGTGAAAGGATCCTCGAGTCTAGAGGATTTCAGGTGTTCCTCAACACGAGTCGGGTCTGCAGGGGGGATCGCACTAGCCGAAGCATTGAAAACTTGTACCCTTTTGAAGAAACTTGACTTACGTGACAACATGTTCGGATCAAAAGCCGGGGTTGCATTGAGTAATAACCTATCCATGCACGCTAATCTCACGGAAATTTACCTTAGTTACTTGAGTTTCGAAGACAAAGGGACTATCGCGATAGCGAATGCTCTAAAAACCTCCAAATCACCCCTCGAAGTCATTGAGATGGCGGGAAACAACATTACTTTCGAAGCGGCAAAAGGTTTAGCTGATTGCATGGCTTCAAAGAAACATTCTCTAACCAAAATAAACTTATCCGAGAATGAACTAAAGGACGAAGGTGCCATCACGATCGGGAAGGCGCTCGAAGATGATTTTGAACGATTGTGCATCGTTAATTTGAGTGCAAACATGATCAAAATAGATGGAGCTATGTCTTTGTCTAAAGCAGTTGTCGGAAATTAG 1380 45.07 MESPQAHMRSIKLWPPNHTTRVLLVNRIIKCFTTPSILTRKYGLLSKEEAEEEAKQIESAGFIAASHQFEKDPESDGGSAVQVYAKESSKLMVEFIKTGHKPKESMPELTKSDHVFDISGGRRAFIEAEEAKELLKPLKEPGNNFTKICFSNRSFGLPAAHVAALVLSGVKDQLTEVDLSDIVSRRPEPEAVEVMKMFASALEGCKLSYLNLSNNVLNEKGVRAFGDLLRSQGGLVELHLMNAGISPEAAKAVCELIRATEKLKVLHFHHNRMGDEGALAISQLVKGSSSLEDFRCSSTRVGSAGGIALAEALKTCTLLKKLDLRDNMFGSKAGVALSNNLSMHANLTEIYLSYLSFEDKGTIAIANALKTSKSPLEVIEMAGNNITFEAAKGLADCMASKKHSLTKINLSENELKDEGAITIGKALEDDFERLCIVNLSANMIKIDGAMSLSKAVVGN 459
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fso1g02223 459 Gene3D WPP domain 10 106 IPR038214 -
Fso1g02223 459 Pfam WPP domain 10 104 IPR025265 -
Fso1g02223 459 SUPERFAMILY RNI-like 125 457 - -
Fso1g02223 459 SMART LRR-RI-2 260 287 - -
Fso1g02223 459 SMART LRR-RI-2 344 371 - -
Fso1g02223 459 SMART LRR-RI-2 316 343 - -
Fso1g02223 459 SMART LRR-RI-2 373 400 - -
Fso1g02223 459 SMART LRR-RI-2 288 315 - -
Fso1g02223 459 SMART LRR-RI-2 204 231 - -
Fso1g02223 459 SMART LRR-RI-2 232 259 - -
Fso1g02223 459 SMART LRR-RI-2 402 429 - -
Fso1g02223 459 Gene3D Ribonuclease Inhibitor 122 418 IPR032675 -
Fso1g02223 459 PANTHER RAN GTPASE-ACTIVATING PROTEIN 1 2 458 IPR045203 GO:0005096(InterPro)
Fso1g02223 459 Pfam Leucine Rich repeat 205 225 IPR001611 GO:0005515(InterPro)
Fso1g02223 459 Pfam Leucine Rich repeat 402 423 IPR001611 GO:0005515(InterPro)
Fso1g02223 459 Pfam Leucine Rich repeat 316 338 IPR001611 GO:0005515(InterPro)
Fso1g02223 459 Pfam Leucine Rich repeat 262 282 IPR001611 GO:0005515(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fso1g02223 K14319 Ran GTPase-activating protein 1
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Event-related genes

Select Gene_1 Gene_2 Event_name
96167 Fso1g02223 Fso2g02654
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fso Fso-Chr1:63233951 Fso2g02654 Fso-Chr2:63463375 dispersed