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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fso1g02257 ATGAATCCTTTTTACTCTGTTGTTAAAGAAGAGTATCCATCAAGTGGTGGTGATGGTGGTAGTGGTGGTGGTGGTGGTAGTGGTGGCGGTGGTGGTGGTGGCGGTGGTGGTGCAAGGGGAAAACAGCCAACGATGATGGAACAAGCTCCACAGCCAATGGAGGGCCTTCATGATGCTGGGCCTCCACCATTTTTGACCAAAATCTATGATATGGTGAATGATCAAAGTATTGATCACATAATTTGTTGGAGCAGAGGAGGTCAAAGCTTTGTTGTGTTGGATCCACATGCTTTTTCTACTAATCTTCTACCAAGATACTTTAAGCACAATAATTTCTCTAGCTTTGTGAGGCAGCTCAATACTTATGGATTTAGAAAGATTGATCCTGATACATGGGAGTTTGCAAATGAAGCATTTGTGAGAGGCCAAAGGCATGTTTTAAAGAACATTAAAAGAAGAAGAACACCTAGTTCTCAAGCTTTATCTCCAACACATGTTAGTGAAATTGGAAAATCCAATTCAGATGAAGTTGGTCATTTAAAACATGAAAAACAAGTTCTTATGATGGAATTAGTGAAGCTTAAACAACAACAACAAACCACTCGAGCCCAACTTCAAGCGATGGAGCTACGATTACAAGGAACCGAGAAAAAACAACAAAAGATGATGAATTTCTTGGCAAAAGCTATGCAAAATCCTGACTTTGTGCAGAAATTAGTCGAACATGGTAAACGAAAGGAGCTTCAAGAAGCCATCAAGAACCAGATTGGTGAATCAAGCCAAATGGGTAGTGGGTCTAAGTTGATTAAAGCTGAACCTGAGGAATTCATGGATAATTCATCATTTCAATTGTCTGAACTTGAGGCACTTGCTTTAGAGATTCAAGGGTTTGGTAGATCGAAAAGAAATCAAGACGAAGAACAACAACGCAGTGATCTTGAATTTGAAGGTGGGGAGAAAGAACTTGATGATGAATTCTGGGAAGAGTTGTTTAGTGAGAGGCCTGATGAACAATCTGCTGATGATGTGAATTTCTTGGCTGATAAGTTGGATTTCTTGGGCTCGAGCCCAAAGTAG 1077 40.39 MNPFYSVVKEEYPSSGGDGGSGGGGGSGGGGGGGGGGARGKQPTMMEQAPQPMEGLHDAGPPPFLTKIYDMVNDQSIDHIICWSRGGQSFVVLDPHAFSTNLLPRYFKHNNFSSFVRQLNTYGFRKIDPDTWEFANEAFVRGQRHVLKNIKRRRTPSSQALSPTHVSEIGKSNSDEVGHLKHEKQVLMMELVKLKQQQQTTRAQLQAMELRLQGTEKKQQKMMNFLAKAMQNPDFVQKLVEHGKRKELQEAIKNQIGESSQMGSGSKLIKAEPEEFMDNSSFQLSELEALALEIQGFGRSKRNQDEEQQRSDLEFEGGEKELDDEFWEELFSERPDEQSADDVNFLADKLDFLGSSPK 358
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fso1g02257 358 FunFam Heat shock transcription factor 1 57 154 - -
Fso1g02257 358 SMART hsfneu3 60 153 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Fso1g02257 358 Gene3D - 57 154 IPR036388 -
Fso1g02257 358 ProSitePatterns HSF-type DNA-binding domain signature. 103 127 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Fso1g02257 358 SUPERFAMILY Winged helix DNA-binding domain 60 153 IPR036390 -
Fso1g02257 358 Coils Coil 191 218 - -
Fso1g02257 358 MobiDBLite consensus disorder prediction 299 326 - -
Fso1g02257 358 MobiDBLite consensus disorder prediction 11 45 - -
Fso1g02257 358 PRINTS Heat shock factor (HSF) domain signature 102 114 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Fso1g02257 358 PRINTS Heat shock factor (HSF) domain signature 115 127 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Fso1g02257 358 PRINTS Heat shock factor (HSF) domain signature 64 87 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Fso1g02257 358 Pfam HSF-type DNA-binding 64 153 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Fso1g02257 358 MobiDBLite consensus disorder prediction 299 317 - -
Fso1g02257 358 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 51 340 IPR027725 GO:0000978(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0034605(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fso1g02257 K09419 heat shock transcription factor, other eukaryote
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fso Fso-Chr11:76323206 Fso1g02257 Fso-Chr1:63814275 dispersed
Fso Fso-Chr12:64390764 Fso1g02257 Fso-Chr1:63814275 dispersed
Fso Fso-Chr1:63814275 Fso4g00638 Fso-Chr4:8679348 dispersed
Fso Fso-Chr1:63814275 Fso2g02680 Fso-Chr2:63687488 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Fso1g00521 . 24 466 Heat shock transcription factors Hsfs gene family AT4G13980 50.769 9.38e-133 389.0
Fso1g02257 . 1 402 Heat shock transcription factors Hsfs gene family AT3G22830 42.506 3.47e-97 293.0
Fso2g02680 . 42 376 Heat shock transcription factors Hsfs gene family AT3G22830 51.94 3.01e-105 311.0
Fso2g02842 . 1 344 Heat shock transcription factors Hsfs gene family AT5G45710 43.562 3.02e-88 267.0
Fso2g03214 . 31 134 Heat shock transcription factors Hsfs gene family AT2G26150 44.545 1.82e-25 100.0
Fso3g02024 . 6 477 Heat shock transcription factors Hsfs gene family AT1G32330 48.333 5.18e-130 382.0
Fso4g00638 . 31 341 Heat shock transcription factors Hsfs gene family AT2G26150 53.211 3.24e-109 322.0
Fso5g00452 . 1 343 Heat shock transcription factors Hsfs gene family AT1G46264 53.333 2.33e-113 332.0
Fso5g01685 . 38 244 Heat shock transcription factors Hsfs gene family AT2G41690 52.404 1.55e-63 196.0
Fso6g00690 . 4 477 Heat shock transcription factors Hsfs gene family AT1G32330 49.606 3.35e-137 402.0
Fso7g00338 . 1 397 Heat shock transcription factors Hsfs gene family AT4G18880 42.714 3.00e-91 278.0
Fso7g00757 . 1 401 Heat shock transcription factors Hsfs gene family AT4G18880 44.717 1.40e-87 268.0
Fso8g00108 . 14 203 Heat shock transcription factors Hsfs gene family AT3G24520 58.586 5.15e-77 235.0
Fso10g01743 . 1 344 Heat shock transcription factors Hsfs gene family AT5G45710 42.391 1.24e-86 263.0
Fso10g03465 . 1 343 Heat shock transcription factors Hsfs gene family AT1G46264 52.547 7.16e-109 320.0
Fso11g00729 . 31 343 Heat shock transcription factors Hsfs gene family AT2G26150 54.848 8.63e-115 335.0
Fso11g02985 . 14 195 Heat shock transcription factors Hsfs gene family AT3G24520 66.492 5.83e-81 246.0
Fso12g00329 . 37 366 Heat shock transcription factors Hsfs gene family AT4G18880 39.521 1.37e-72 229.0
Fso12g02176 . 24 466 Heat shock transcription factors Hsfs gene family AT4G13980 50.333 5.58e-133 389.0
Fso12g02469 . 2 261 Heat shock transcription factors Hsfs gene family AT5G03720 52.29 1.23e-88 272.0
Fso13g00136 . 3 264 Heat shock transcription factors Hsfs gene family AT5G62020 53.43 7.12e-91 271.0
Fso13g02327 . 15 199 Heat shock transcription factors Hsfs gene family AT3G24520 58.333 3.61e-74 229.0
Fso13g02390 . 31 246 Heat shock transcription factors Hsfs gene family AT2G26150 46.154 1.52e-71 226.0
Fso14g00310 . 46 135 Heat shock transcription factors Hsfs gene family AT4G17750 65.556 1.78e-41 141.0
Fso14g00311 . 151 299 Heat shock transcription factors Hsfs gene family AT1G67970 31.447 2.45e-15 70.9
Fso14g01257 . 1 343 Heat shock transcription factors Hsfs gene family AT1G46264 54.133 1.18e-115 337.0
Fso15g01513 . 7 268 Heat shock transcription factors Hsfs gene family AT4G36990 48.12 2.81e-68 211.0
Fso15g02193 . 6 477 Heat shock transcription factors Hsfs gene family AT1G32330 49.398 1.21e-135 398.0
Fso15g02396 . 43 218 Heat shock transcription factors Hsfs gene family AT2G26150 34.463 5.34e-25 101.0
Fso18g03050 . 12 267 Heat shock transcription factors Hsfs gene family AT5G62020 52.778 2.11e-93 279.0
Fso10000522.1g00011 . 1 267 Heat shock transcription factors Hsfs gene family AT5G62020 45.926 3.90e-73 224.0
Fso10000054.1g00001 . 17 262 Heat shock transcription factors Hsfs gene family AT5G03720 50.996 4.62e-81 248.0
Fso10001372.1g00001 . 1 291 Heat shock transcription factors Hsfs gene family AT5G62020 50.0 9.36e-93 277.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Fso HSF_DNA-bind 5.2e-33 CL0123 TF HSF