AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fso1g02294 ATGGCGACAATGCACCAAATTTCTCTCACAAACAACCTTCAATGGATCCCCAACAAACCTCAACTCAACACCCTCAAACACACACCTCAAAAGAATCATATCTTCATACGCTCTACACCATCATCATCTTCTTCATCGTTAAACCAAAAAATTAACAGCATATCATCCCTCAGTGCGAATGGAACCCGTGTTAACTCATCGTTCGATTACAACCACACCGGAGTACACGCCAACAACGACCACTACGAGTACGAGAAGGGTTTAATCGGAAACGGTCAACAGTACCCTAGACCTATGGAAATACCGTGGAAGAAGGAGCTGTGTAATTCCGTACAACTCATCGGAACTGTTGGTACTCCGGTGGAGTTTAAGCAGCTGAGCTCCGGAAAGGTGCTTGCTTGGTGTCGTCTTGCTGTCAAGAAATCGGCAACTGATACTACATGGATCAATTTGACGTTTTGGGATGAGATGGCACATATTGCTTCTCAGCATGTGGAAAAAGGACAACAAATATATGTATCAGGTCGTCTTGTTTCAGATACGGTTGATAGTGATGATGGAAAGCAGCAAACTTACTATAAGATAGTTGTTCAGCAGCTAAAATTCATTGAGAGAAGCCCACCTTCAGCATCATCTAATGATGGAGACTTCAACTACAATTACAATTCCAACTCGAACTCTATGGCAACAGGTAGAAAGCAAAAGAATTATGCAGCAAATGGTACAGGATCTGTAGAGGAACTATGGCAAGCTTTTTTCGCTAACCCTGTTGATTGGTGGGATAATAGGAAGAACAAGAGAAGCCCAAATTATCCCGATTTCAAGCACAAAGACACCGGTGAAGCATTATGGGTCGAAGGGAGGTTCAATCCGTCTTGGGTTAAGTCTCAGTTATCGGTATTAGATTCACGAATGGAATATTTTCATGATCAAACGCGCTCAGATTCCATGTTTGGAGACAACCTGACATCTTATTAA 978 42.43 MATMHQISLTNNLQWIPNKPQLNTLKHTPQKNHIFIRSTPSSSSSSLNQKINSISSLSANGTRVNSSFDYNHTGVHANNDHYEYEKGLIGNGQQYPRPMEIPWKKELCNSVQLIGTVGTPVEFKQLSSGKVLAWCRLAVKKSATDTTWINLTFWDEMAHIASQHVEKGQQIYVSGRLVSDTVDSDDGKQQTYYKIVVQQLKFIERSPPSASSNDGDFNYNYNSNSNSMATGRKQKNYAANGTGSVEELWQAFFANPVDWWDNRKNKRSPNYPDFKHKDTGEALWVEGRFNPSWVKSQLSVLDSRMEYFHDQTRSDSMFGDNLTSY 325
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fso1g02294 325 PANTHER SINGLE-STRANDED DNA-BINDING PROTEIN 49 310 IPR011344 GO:0003697(PANTHER)|GO:0003697(InterPro)|GO:0006260(InterPro)|GO:0006264(PANTHER)|GO:0009295(PANTHER)|GO:0042645(PANTHER)|GO:0051096(PANTHER)
Fso1g02294 325 Pfam Single-strand binding protein family 109 202 IPR000424 GO:0003697(InterPro)
Fso1g02294 325 SUPERFAMILY Nucleic acid-binding proteins 109 299 IPR012340 -
Fso1g02294 325 ProSiteProfiles Single-strand binding (SSB) domain profile. 107 204 IPR000424 GO:0003697(InterPro)
Fso1g02294 325 CDD SSB-OBF 111 203 IPR000424 GO:0003697(InterPro)
Fso1g02294 325 NCBIfam single-stranded DNA-binding protein 108 241 IPR011344 GO:0003697(InterPro)|GO:0006260(InterPro)
Fso1g02294 325 Gene3D - 107 242 IPR012340 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fso1g02294 K03111 single-strand DNA-binding protein
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fso Fso-Chr1:64669749 Fso5g00505 Fso-Chr5:8912479 dispersed