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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fso1g02295 ATGGAGCAAAACACCACCACTTTGGATCTTTTTAAGGATATTGATCTTGCAACCGAGCTCCGGTTAGGGTTGCCGGGATCCGATGACCAGCCGGAGATGAAAAGCAGCCTTTGCGGCAACAAAAGAAGCTCATCGGAGATGGGATCAACCGCCTCCTCAGATGAAAATCAATCAAGATTCTCACCACCCACCAAGGAACAAGTTGTCGGGTGGCCGCCGTTGAGATCTTACCGAAAAAACAAGATTCAGGCGAAGAAAACGGAGTCGGAGATGGGCGGATCGGGAATGTATGTGAAAGTAAGCATGGATGGAGCTCCATATTTGAGGAAACTGGACCTTAAAATGTACCAAAGTTATGAAGAGCTCATGAAGGGTTTGCAAGAGATGTTCAAGTGCATCATTGGGTTGTACTCTGAGAGAGAAGGGTACAATGGATCACAGCATGTTCCAACTTATGAAGATAAAGATGGAGATTGGATGCTTGTTGGAGATGTACCATGGGAGATGTTTGTAACTTCTTGCAAAAGATTAAGAATCATGAAGAGTTGTGAAGCTAGAGGGTTGGGTGTATAA 573 45.03 MEQNTTTLDLFKDIDLATELRLGLPGSDDQPEMKSSLCGNKRSSSEMGSTASSDENQSRFSPPTKEQVVGWPPLRSYRKNKIQAKKTESEMGGSGMYVKVSMDGAPYLRKLDLKMYQSYEELMKGLQEMFKCIIGLYSEREGYNGSQHVPTYEDKDGDWMLVGDVPWEMFVTSCKRLRIMKSCEARGLGV 190
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fso1g02295 190 ProSiteProfiles PB1 domain profile. 95 182 IPR053793 -
Fso1g02295 190 MobiDBLite consensus disorder prediction 33 64 - -
Fso1g02295 190 Gene3D - 90 190 - -
Fso1g02295 190 FunFam Auxin-responsive protein 90 190 - -
Fso1g02295 190 Pfam AUX-IAA family 17 189 IPR033389 -
Fso1g02295 190 SUPERFAMILY CAD & PB1 domains 88 181 - -
Fso1g02295 190 MobiDBLite consensus disorder prediction 22 70 - -
Fso1g02295 190 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 17 186 IPR003311 GO:0005634(InterPro)|GO:0006355(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fso1g02295 K14484 auxin-responsive protein IAA
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Event-related genes

Select Gene_1 Gene_2 Event_name
95661 Fso14g02375 Fso1g02295
96181 Fso1g02295 Fso2g02625
96182 Fso1g02295 Fso5g02146
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fso Fso-Chr1:64674697 Fso5g02146 Fso-Chr5:61439771 dispersed
Fso Fso-Chr10:63194287 Fso1g02295 Fso-Chr1:64674697 transposed
Fso Fso-Chr1:64674697 Fso14g02374 Fso-Chr14:56964004 wgd
Fso Fso-Chr1:64674697 Fso2g02625 Fso-Chr2:63151435 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Fso1g00574 . 62 246 IAA gene family AT2G33310 53.03 2.52e-62 193.0
Fso1g02295 ACH 14 170 IAA gene family AT3G23030 57.143 2.29e-60 184.0
Fso2g01627 ACH,WGDA 1 228 IAA gene family AT4G14550 52.083 7.40e-75 226.0
Fso2g01826 . 76 223 IAA gene family AT2G33310 34.459 1.41e-23 92.8
Fso2g02570 ACH,WGDA 53 223 IAA gene family AT2G33310 48.837 1.17e-40 138.0
Fso2g02625 ACH,WGDA 8 171 IAA gene family AT3G23030 57.222 2.23e-62 189.0
Fso3g01395 . 96 253 IAA gene family AT1G04100 31.013 1.25e-20 84.7
Fso4g00221 . 1 227 IAA gene family AT4G14550 73.391 3.67e-116 329.0
Fso4g01847 . 1 225 IAA gene family AT4G14550 51.394 1.03e-73 223.0
Fso5g02083 ACH,WGDA 44 232 IAA gene family AT2G33310 48.113 2.17e-53 173.0
Fso5g02146 ACH,WGDA 9 163 IAA gene family AT3G23030 58.333 3.81e-60 183.0
Fso6g01094 WGDA 1 228 IAA gene family AT4G14550 48.062 2.04e-72 221.0
Fso8g00479 ACH 1 236 IAA gene family AT3G04730 50.0 1.31e-74 226.0
Fso8g00493 ACH 9 163 IAA gene family AT3G23030 44.848 1.00e-38 128.0
Fso10g02204 . 16 170 IAA gene family AT3G23030 54.839 9.19e-62 188.0
Fso10g03190 ACH,WGDA 1 227 IAA gene family AT4G14550 46.154 9.52e-74 226.0
Fso10g03969 ACH,WGDA 7 215 IAA gene family AT1G04250 48.804 5.17e-59 183.0
Fso10g03970 ACH,WGDA 2 217 IAA gene family AT3G04730 37.963 1.01e-34 119.0
Fso10g03995 ACH 1 235 IAA gene family AT3G04730 48.746 4.97e-75 228.0
Fso10g04015 ACH 3 266 IAA gene family AT1G51950 54.965 1.93e-85 254.0
Fso11g00130 . 1 228 IAA gene family AT4G14550 68.67 3.59e-108 309.0
Fso11g03003 ACH 3 228 IAA gene family AT4G14550 50.196 1.52e-68 210.0
Fso12g01870 . 45 233 IAA gene family AT2G33310 47.644 1.11e-43 147.0
Fso13g01875 ACH 10 163 IAA gene family AT3G23030 45.223 1.62e-37 125.0
Fso13g02109 . 77 162 IAA gene family AT3G23030 28.723 1.60e-07 47.0
Fso14g00987 ACH 7 214 IAA gene family AT4G14550 45.933 4.46e-56 175.0
Fso14g02291 ACH,WGDA 44 246 IAA gene family AT2G33310 48.707 4.09e-57 183.0
Fso14g02374 ACH 1 236 IAA gene family AT3G04730 64.49 4.86e-103 297.0
Fso14g02375 ACH,WGDA 9 167 IAA gene family AT3G23030 55.932 1.16e-62 189.0
Fso15g01405 ACH 65 236 IAA gene family AT3G04730 60.92 1.46e-64 202.0
Fso17g01344 ACH,WGDA 1 227 IAA gene family AT4G14550 47.492 4.89e-75 230.0
Fso17g01842 ACH,WGDA 2 222 IAA gene family AT3G04730 43.75 1.22e-50 164.0
Fso17g01843 WGDA 36 221 IAA gene family AT1G04250 41.935 1.22e-34 119.0
Fso10000252.1g00001 . 37 245 IAA gene family AT1G51950 45.07 1.67e-50 162.0
Fso10000204.1g00004 . 8 171 IAA gene family AT3G23030 57.222 2.11e-62 189.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Fso AUX_IAA 2.5e-56 CL0072 TR AUX/IAA