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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fso1g02309 ATGACAGACTGCAAAGGAAAGAGTTCATGGCCAGAGCTAGTAGGGTCGCACGGGGAAGCGGCTGCGGCTAAGATCGAGAAAGAGAATCCACATGTTGATGCTATTGTGCTATTGGAAGGATCTCCTACCACTAAGGACTTTCGGTGCAATCGTGTGTGGGTGTGGGTAGACTCTCATGGGGTTGTCCTTCGAACTCCTAAAATCGGCTAA 210 50.0 MTDCKGKSSWPELVGSHGEAAAAKIEKENPHVDAIVLLEGSPTTKDFRCNRVWVWVDSHGVVLRTPKIG 69
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fso1g02309 69 PRINTS Potato inhibitor I signature 9 22 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Fso1g02309 69 PRINTS Potato inhibitor I signature 46 56 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Fso1g02309 69 PRINTS Potato inhibitor I signature 34 45 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Fso1g02309 69 Pfam Potato inhibitor I family 7 69 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Fso1g02309 69 Gene3D Trypsin Inhibitor V, subunit A 1 68 - -
Fso1g02309 69 SUPERFAMILY CI-2 family of serine protease inhibitors 3 69 IPR036354 -
Fso1g02309 69 ProSitePatterns Potato inhibitor I family signature. 10 21 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Fso1g02309 69 PANTHER PROTEIN, PUTATIVE, EXPRESSED-RELATED 5 69 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fso1g02309 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fso Fso-Chr1:64855826 Fso1g02309 Fso-Chr1:64889956 dispersed
Fso Fso-Chr1:64889956 Fso1g02313 Fso-Chr1:64935987 dispersed
Fso Fso-Chr1:64863748 Fso1g02309 Fso-Chr1:64889956 tandem