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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fso1g02312 ATGTTCTTCAATACACAATTCACAATGTCAACCACCTGTGAAGGAAAGAGTTCATGGCCCGAGCTTGTAGGCGTGAGGGGAGATGCAGCGGCTAGTACAATTGAGAGAGAGAATACACGGGTCGATGCTATTGTGGTTGTAGATGGAAGGGATAATGTTACAGGTGATTTCCGATGCGATCGTGTGTGGGTGTGGGTGAACTCTAATGGGGTGGTCATTCGAACTCCATTCATTGGCTAA 240 47.08 MFFNTQFTMSTTCEGKSSWPELVGVRGDAAASTIERENTRVDAIVVVDGRDNVTGDFRCDRVWVWVNSNGVVIRTPFIG 79
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fso1g02312 79 SUPERFAMILY CI-2 family of serine protease inhibitors 12 79 IPR036354 -
Fso1g02312 79 PANTHER PROTEIN, PUTATIVE, EXPRESSED-RELATED 13 79 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Fso1g02312 79 ProSitePatterns Potato inhibitor I family signature. 19 30 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Fso1g02312 79 Gene3D Trypsin Inhibitor V, subunit A 9 78 - -
Fso1g02312 79 Pfam Potato inhibitor I family 16 79 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fso1g02312 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fso Fso-Chr1:64929401 Fso1g02317 Fso-Chr1:65003720 dispersed
Fso Fso-Chr1:64920645 Fso1g02312 Fso-Chr1:64929401 tandem
Fso Fso-Chr1:64929401 Fso1g02313 Fso-Chr1:64935987 tandem