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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fso2g00047 ATGCCTGGAAGCTTGGAGCCGTTGGATTTGGGCGTTCAGATCCCCTACCATTTCAGGTGTCCGATTTCCCTTGAGCTTATGAGGGATCCGGTCATCGTCGGCACCGGTCAGACCTACGATCGCACCAGCATCGAGTCATGGGTGGCCACCGGGAACACCACGTGTCCGGTCACACGTCTGCAGCTTACAGACTTCACTCTGATTCCGAACCACACGCTACGACGGCTCATACAGGAATGGTGTGTGGCGAACCGGTCTTACGGTGTTGAGAGGATTCCGACGCCGAAGCAACCGGCGGATCCGGTGACGGTGAGGTCGTTGTTGAATCAGGCTGGTTCGGAGGCGAACAGTAGGCATGTTAGGTTGTCTGCTCTTCGTCGTCTCCGTGGATTGGCCCGTGAATCGGAGAAAAATCGATCGGTGATCTCGACGTATAACGTGCGTGAGGTTTTGATCGGAATATTGTTCTCGGAGACCGATTCTACGGTTTCTACCTCGTCGGAGTTGAATCTGGAGTCGCTAGCGATTCTATCGTCGTTTCCGCTTTCTGAATCGGAGTGTCTGTTAGTATCATCAGATCCTGATCGGATTTCATACCTAATTTCTCTCCTCTTGCATTCGTCGATTGACGTTAGGGTAAACGCCGCATCGTTGATCGAAAACGTCGTCGCCGGCACAAGATCACCGGAGCACCGAGCGGAGATCAGCAATGACGACGAGATCTTCGACCGAATCGTCGGAATTCTGAACTATCCGTTAACATATCCTCGAGCAATGAAAGTCGGAATCAAAGCGTTGTTCGCTCTATGCTTAGTGAAGCAACACCGTCACAAGGCGGTGGACGCCGGAGCGGTGGAGGCGCTGATTGACAGACTACCGGACTTCGAGAAATGCGACGCCGAGAGAGCGTTAGCAACGGTGGAGCTCCTATGCCGGATTCCGCAAGGATGCGCGGCGTTTGCGTCTCACGCGCTCACCGTACCTCTGTTGGTGAAAATCATTCTCAAAATCTCCGATCGGGCGACGGAGTACGCCACCGGAGCTTTGCTGTCGCTGTGCTCGGCGGCGGAGCGGTTGCAGCGTGAGGCGGTGGCCGCCGGAGTGCTGACGCAGCTGCTGTTGCTTGTGCAAAGCGATTGTACGGAACGTGCAAAGCGTAAAGCACAAATGCTGTTGAAACTTCTACGGGACTCTTGGCCGGAGAAATCTGTTCGGAGCTCCGATGACTTTGCGTGCAGCGACGTCGTTCCGTTTTGA 1257 54.65 MPGSLEPLDLGVQIPYHFRCPISLELMRDPVIVGTGQTYDRTSIESWVATGNTTCPVTRLQLTDFTLIPNHTLRRLIQEWCVANRSYGVERIPTPKQPADPVTVRSLLNQAGSEANSRHVRLSALRRLRGLARESEKNRSVISTYNVREVLIGILFSETDSTVSTSSELNLESLAILSSFPLSESECLLVSSDPDRISYLISLLLHSSIDVRVNAASLIENVVAGTRSPEHRAEISNDDEIFDRIVGILNYPLTYPRAMKVGIKALFALCLVKQHRHKAVDAGAVEALIDRLPDFEKCDAERALATVELLCRIPQGCAAFASHALTVPLLVKIILKISDRATEYATGALLSLCSAAERLQREAVAAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPEKSVRSSDDFACSDVVPF 418
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fso2g00047 418 Gene3D - 103 397 IPR011989 -
Fso2g00047 418 Pfam U-box domain 14 85 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Fso2g00047 418 ProSiteProfiles U-box domain profile. 13 87 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Fso2g00047 418 CDD RING-Ubox-PUB 15 67 IPR045210 -
Fso2g00047 418 PANTHER WDSAM1 PROTEIN 11 403 IPR045185 GO:0061630(InterPro)
Fso2g00047 418 FunFam RING-type E3 ubiquitin transferase 8 90 - -
Fso2g00047 418 SMART Ubox-2 17 80 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Fso2g00047 418 Gene3D Zinc-RING finger domain, C3HC4 (zinc finger) 13 87 IPR013083 -
Fso2g00047 418 SUPERFAMILY ARM repeat 104 395 IPR016024 -
Fso2g00047 418 SUPERFAMILY RING-U-box 12 89 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fso2g00047 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
95376 Fso13g01606 Fso2g00047
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fso Fso-Chr1:3394772 Fso2g00047 Fso-Chr2:576725 dispersed
Fso Fso-Chr2:576725 Fso8g01871 Fso-Chr8:48135956 dispersed
Fso Fso-Chr13:55250982 Fso2g00047 Fso-Chr2:576725 wgd
Fso Fso-Chr2:576725 Fso6g02175 Fso-Chr6:51433080 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Fso1g00049 . 357 492 U-box gene family AT5G67530 40.541 1.41e-19 91.7
Fso1g00050 . 388 627 U-box gene family AT3G46510 26.23 1.68e-16 78.2
Fso1g00272 ACH,WGDA 6 404 U-box gene family AT2G35930 55.663 1.63e-163 464.0
Fso1g00593 . 1 514 U-box gene family AT1G04510 71.538 0.0 778.0
Fso1g01814 . 847 927 U-box gene family AT2G28830 69.88 1.05e-34 122.0
Fso1g02225 ACH 530 787 U-box gene family AT2G23140 26.923 1.14e-14 75.9
Fso1g02395 ACH 236 449 U-box gene family AT2G33340 30.734 3.93e-17 83.6
Fso1g02426 . 224 317 U-box gene family AT2G33340 34.043 1.26e-06 48.9
Fso1g02436 ACH 1 460 U-box gene family AT3G07360 53.099 3.62e-171 488.0
Fso1g02437 . 1 276 U-box gene family AT3G07370 63.309 1.51e-129 367.0
Fso1g02640 ACH 233 464 U-box gene family AT2G33340 24.542 2.28e-12 66.2
Fso2g00047 ACH 1 421 U-box gene family AT1G49780 65.721 0.0 540.0
Fso2g00069 . 352 491 U-box gene family AT5G67530 41.447 9.56e-30 112.0
Fso2g00274 . 11 101 U-box gene family AT3G07370 36.264 8.18e-09 55.5
Fso2g00568 . 546 776 U-box gene family AT2G23140 26.609 1.06e-08 55.8
Fso2g01876 . 266 506 U-box gene family AT2G33340 26.82 1.09e-09 58.5
Fso2g02314 ACH 237 464 U-box gene family AT2G33340 25.954 1.12e-14 73.2
Fso2g02491 . 277 447 U-box gene family AT1G04510 25.568 5.25e-10 60.1
Fso2g02746 WGDA 339 496 U-box gene family AT5G67530 26.708 6.18e-15 71.6
Fso2g02840 . 1 726 U-box gene family AT1G29340 62.534 0.0 834.0
Fso2g02927 . 547 815 U-box gene family AT2G23140 33.808 2.07e-33 128.0
Fso3g00091 . 9 405 U-box gene family AT2G35930 34.069 5.43e-68 219.0
Fso3g00242 . 256 501 U-box gene family AT2G33340 22.519 3.66e-07 50.4
Fso3g00278 . 369 428 U-box gene family AT3G46510 55.0 1.69e-14 67.0
Fso3g00414 . 1 308 U-box gene family AT1G60190 37.621 8.61e-63 209.0
Fso3g00781 . 9 107 U-box gene family AT3G07370 31.0 1.88e-08 53.1
Fso3g00783 . 9 107 U-box gene family AT3G07370 31.0 1.88e-08 53.1
Fso3g00860 . 546 827 U-box gene family AT2G23140 50.53 3.79e-81 261.0
Fso3g01428 . 237 433 U-box gene family AT1G04510 23.041 4.65e-10 59.7
Fso3g02075 . 366 621 U-box gene family AT3G46510 24.138 2.86e-09 57.8
Fso3g02388 ACH 118 410 U-box gene family AT2G35930 46.984 3.65e-90 273.0
Fso3g02389 ACH 3 90 U-box gene family AT3G52450 61.053 3.35e-38 130.0
Fso4g00011 . 26 766 U-box gene family AT1G76390 27.793 3.22e-38 152.0
Fso4g00106 . 34 832 U-box gene family AT2G45910 51.405 0.0 832.0
Fso4g00196 WGDA 516 742 U-box gene family AT2G23140 32.773 6.47e-21 96.7
Fso4g00474 . 447 712 U-box gene family AT1G67530 28.777 8.44e-25 106.0
Fso4g00540 . 234 422 U-box gene family AT2G33340 26.108 9.10e-08 52.8
Fso4g00705 . 350 501 U-box gene family AT5G67530 41.25 1.02e-32 130.0
Fso4g00751 . 391 434 U-box gene family AT5G42340 43.182 5.41e-06 41.2
Fso4g00901 WGDA 476 749 U-box gene family AT3G54790 36.972 5.40e-33 128.0
Fso4g01298 . 340 501 U-box gene family AT5G67530 49.697 1.40e-43 160.0
Fso4g01844 ACH 243 326 U-box gene family AT3G46510 47.059 1.43e-17 86.7
Fso5g01885 . 12 647 U-box gene family AT3G46510 68.545 0.0 872.0
Fso5g01954 WGDA 353 494 U-box gene family AT5G67530 43.137 4.19e-29 111.0
Fso5g02045 ACH 181 460 U-box gene family AT3G07360 63.604 6.68e-126 365.0
Fso5g02046 . 1 152 U-box gene family AT3G07360 48.295 7.16e-47 157.0
Fso5g02058 ACH 236 423 U-box gene family AT2G33340 27.225 1.06e-13 72.4
Fso5g02101 . 6 760 U-box gene family AT3G54790 46.928 0.0 575.0
Fso5g02153 . 357 477 U-box gene family AT5G67530 49.624 3.97e-32 129.0
Fso5g02185 ACH 283 544 U-box gene family AT1G23030 26.619 2.72e-17 84.0
Fso6g00272 WGDA 345 496 U-box gene family AT5G67530 27.632 2.47e-14 70.1
Fso6g00546 . 256 319 U-box gene family AT2G33340 32.812 1.26e-06 43.5
Fso6g00699 . 833 960 U-box gene family AT2G28830 54.135 7.88e-37 133.0
Fso6g00953 . 45 830 U-box gene family AT2G45910 33.787 3.63e-139 430.0
Fso6g01877 . 11 101 U-box gene family AT3G07370 37.363 1.31e-08 55.1
Fso6g02175 . 1 421 U-box gene family AT1G49780 65.083 0.0 517.0
Fso7g00032 . 385 517 U-box gene family AT5G42340 31.387 9.28e-07 50.1
Fso7g00430 . 157 807 U-box gene family AT1G76390 27.259 1.04e-44 171.0
Fso7g00481 . 75 378 U-box gene family AT5G42340 28.84 6.85e-29 115.0
Fso7g00482 . 239 797 U-box gene family AT1G20780 27.482 2.96e-28 117.0
Fso7g00792 . 410 717 U-box gene family AT1G27910 27.419 6.42e-19 87.4
Fso7g00932 . 527 818 U-box gene family AT2G23140 24.837 2.49e-11 64.7
Fso7g01005 . 541 823 U-box gene family AT2G23140 48.475 3.65e-78 258.0
Fso7g01132 . 53 660 U-box gene family AT5G42340 58.88 0.0 706.0
Fso7g01245 . 353 477 U-box gene family AT5G67530 50.0 2.70e-31 116.0
Fso8g00427 ACH 734 805 U-box gene family AT2G28830 45.192 2.65e-16 80.5
Fso8g00562 . 12 80 U-box gene family AT3G07370 37.681 2.13e-06 48.1
Fso8g01750 . 4 462 U-box gene family AT1G76390 64.086 0.0 580.0
Fso8g01751 . 620 809 U-box gene family AT1G76390 64.737 8.58e-85 265.0
Fso8g01796 . 242 607 U-box gene family AT1G23030 26.7 1.51e-18 89.7
Fso8g01871 WGDA 7 431 U-box gene family AT1G66160 41.556 3.57e-102 310.0
Fso8g01961 . 26 610 U-box gene family AT1G23030 59.396 0.0 644.0
Fso8g01994 . 371 504 U-box gene family AT3G46510 30.935 4.94e-07 51.6
Fso8g02216 . 7 686 U-box gene family AT1G60190 43.867 0.0 552.0
Fso9g01684 . 346 496 U-box gene family AT5G67530 46.358 7.63e-41 155.0
Fso9g01868 ACH,WGDA 325 424 U-box gene family AT2G33340 32.039 8.27e-07 49.3
Fso10g00058 . 4 811 U-box gene family AT1G76390 60.811 0.0 964.0
Fso10g00312 . 25 797 U-box gene family AT1G20780 27.813 1.27e-50 190.0
Fso10g00495 . 34 832 U-box gene family AT2G45910 38.903 1.13e-175 521.0
Fso10g01364 . 1 440 U-box gene family AT5G65920 61.991 0.0 542.0
Fso10g01860 . 6 369 U-box gene family AT4G21350 60.929 1.73e-142 407.0
Fso10g02024 . 291 595 U-box gene family AT5G67530 74.098 6.46e-149 429.0
Fso10g02061 . 2 53 U-box gene family AT5G15400 61.667 4.63e-14 64.3
Fso10g02778 . 462 707 U-box gene family AT1G24330 31.89 9.55e-25 103.0
Fso10g02954 . 2 1030 U-box gene family AT5G15400 73.842 0.0 1576.0
Fso10g02958 WGDA 2 1030 U-box gene family AT5G15400 73.745 0.0 1574.0
Fso10g03074 . 352 493 U-box gene family AT5G67530 44.805 4.52e-32 125.0
Fso10g03141 ACH,WGDA 4 829 U-box gene family AT2G23140 54.392 0.0 822.0
Fso10g03230 ACH,WGDA 544 819 U-box gene family AT2G23140 35.106 3.16e-37 141.0
Fso10g03455 . 369 434 U-box gene family AT3G46510 53.03 3.16e-16 71.2
Fso10g03552 WGDA 1 139 U-box gene family AT1G67530 37.41 1.69e-28 107.0
Fso10g03859 ACH 334 509 U-box gene family AT1G23030 30.0 7.95e-14 72.4
Fso10g04097 ACH 734 805 U-box gene family AT2G28830 42.308 3.24e-15 75.9
Fso11g00025 . 44 832 U-box gene family AT2G45910 48.929 0.0 779.0
Fso11g00031 . 549 799 U-box gene family AT2G23140 27.397 2.86e-14 73.9
Fso11g00045 . 346 500 U-box gene family AT5G67530 55.484 1.76e-57 187.0
Fso11g00087 WGDA 516 742 U-box gene family AT2G23140 32.489 1.52e-19 92.4
Fso11g00640 . 237 449 U-box gene family AT2G33340 25.664 6.49e-07 52.4
Fso11g01076 WGDA 476 748 U-box gene family AT3G54790 38.596 1.67e-34 132.0
Fso12g00514 . 227 474 U-box gene family AT2G33340 24.315 2.10e-06 47.0
Fso12g01732 . 87 460 U-box gene family AT3G07360 60.267 6.19e-159 452.0
Fso12g01733 . 1 276 U-box gene family AT3G07370 65.108 1.72e-135 382.0
Fso12g01947 . 353 495 U-box gene family AT5G67530 43.137 1.36e-28 109.0
Fso12g02057 . 1 664 U-box gene family AT5G01830 56.324 0.0 733.0
Fso12g02344 ACH,WGDA 1 405 U-box gene family AT2G35930 51.325 1.21e-143 413.0
Fso12g02345 ACH 11 402 U-box gene family AT2G35930 51.005 2.16e-132 384.0
Fso12g02502 . 214 401 U-box gene family AT1G49780 29.534 1.55e-12 66.2
Fso13g00202 . 9 94 U-box gene family AT3G07370 29.07 3.55e-06 46.2
Fso13g00277 . 164 512 U-box gene family AT2G33340 20.661 1.17e-06 49.7
Fso13g01093 . 353 477 U-box gene family AT5G67530 50.0 3.92e-31 115.0
Fso13g01606 ACH 1 421 U-box gene family AT1G49780 63.744 0.0 515.0
Fso13g01660 WGDA 237 423 U-box gene family AT1G04510 27.907 5.74e-13 66.6
Fso13g01735 . 603 809 U-box gene family AT2G23140 24.286 8.24e-11 63.2
Fso13g02334 ACH 228 321 U-box gene family AT1G23030 44.0 1.68e-19 91.7
Fso14g00297 . 178 461 U-box gene family AT3G11840 37.801 3.93e-61 198.0
Fso14g00298 . 11 57 U-box gene family AT2G35930 57.407 1.00e-15 68.9
Fso14g00302 WGDA 24 435 U-box gene family AT5G37490 41.509 2.60e-104 315.0
Fso14g00575 ACH 1 769 U-box gene family AT1G24330 61.985 0.0 949.0
Fso14g00798 . 353 475 U-box gene family AT5G67530 47.015 3.57e-27 107.0
Fso14g01069 ACH 385 636 U-box gene family AT3G46510 29.278 5.61e-13 68.6
Fso14g02072 WGDA 353 475 U-box gene family AT5G67530 45.522 6.97e-28 108.0
Fso14g02226 ACH 1 460 U-box gene family AT3G07360 57.447 0.0 521.0
Fso14g02228 . 58 276 U-box gene family AT3G07370 63.014 2.04e-100 291.0
Fso15g01364 ACH 560 819 U-box gene family AT2G23140 33.835 3.75e-38 144.0
Fso15g02098 . 546 819 U-box gene family AT2G23140 31.959 1.84e-26 111.0
Fso15g02336 ACH 1 768 U-box gene family AT1G27910 59.097 0.0 889.0
Fso15g02367 . 351 491 U-box gene family AT5G67530 49.655 1.03e-36 134.0
Fso15g02595 . 353 494 U-box gene family AT5G67530 40.523 2.80e-27 107.0
Fso15g02702 . 346 492 U-box gene family AT5G67530 29.375 1.58e-12 64.7
Fso15g02703 . 346 492 U-box gene family AT5G67530 27.16 4.62e-10 59.7
Fso15g02777 . 460 620 U-box gene family AT1G71020 65.839 6.72e-61 197.0
Fso15g02778 . 23 336 U-box gene family AT1G71020 51.553 1.35e-97 300.0
Fso16g00130 . 9 94 U-box gene family AT3G07370 34.884 5.84e-10 57.8
Fso16g00193 . 24 833 U-box gene family AT4G25160 51.946 0.0 813.0
Fso16g00244 . 6 638 U-box gene family AT3G46510 38.496 1.29e-129 396.0
Fso16g00835 ACH,WGDA 4 828 U-box gene family AT2G23140 50.0 0.0 725.0
Fso16g00880 ACH 18 232 U-box gene family AT3G49810 75.814 6.64e-108 316.0
Fso16g00881 . 259 448 U-box gene family AT3G49810 69.474 2.17e-88 265.0
Fso16g00975 . 10 718 U-box gene family AT4G36550 36.037 9.21e-121 376.0
Fso16g01241 WGDA 10 431 U-box gene family AT1G66160 43.218 1.92e-119 353.0
Fso17g00130 . 353 480 U-box gene family AT5G67530 48.921 6.85e-33 120.0
Fso17g00187 . 4 811 U-box gene family AT1G76390 58.191 0.0 914.0
Fso17g00906 . 559 711 U-box gene family AT2G23140 36.129 3.95e-11 66.6
Fso17g00975 . 15 448 U-box gene family AT3G49810 61.538 0.0 531.0
Fso17g01138 . 71 538 U-box gene family AT5G40140 48.148 9.74e-145 422.0
Fso17g01202 WGDA 2 968 U-box gene family AT5G15400 74.28 0.0 1496.0
Fso17g01311 ACH,WGDA 7 829 U-box gene family AT2G23140 57.488 0.0 882.0
Fso17g01327 ACH 18 448 U-box gene family AT3G49810 70.998 0.0 604.0
Fso17g01359 ACH,WGDA 560 819 U-box gene family AT2G23140 36.466 2.57e-39 147.0
Fso17g01471 . 498 827 U-box gene family AT2G23140 45.921 1.62e-77 252.0
Fso17g01521 WGDA 1 216 U-box gene family AT1G67530 39.352 2.53e-39 152.0
Fso17g01637 . 33 556 U-box gene family AT5G65200 49.718 2.65e-163 474.0
Fso18g00008 . 546 819 U-box gene family AT2G23140 32.302 1.97e-26 111.0
Fso18g00082 . 560 660 U-box gene family AT5G42340 60.396 4.38e-30 110.0
Fso18g00119 . 279 427 U-box gene family AT2G33340 26.087 4.35e-06 46.6
Fso18g00999 . 7 402 U-box gene family AT2G35930 42.157 2.21e-106 318.0
Fso18g01082 . 6 411 U-box gene family AT2G35930 42.857 2.27e-125 367.0
Fso18g01502 . 7 410 U-box gene family AT2G35930 52.719 4.03e-152 435.0
Fso18g01505 . 7 410 U-box gene family AT2G35930 52.719 5.43e-155 442.0
Fso18g01506 . 329 435 U-box gene family AT3G52450 54.63 2.18e-33 118.0
Fso18g01545 . 346 496 U-box gene family AT5G67530 49.669 9.44e-52 172.0
Fso18g01764 . 363 585 U-box gene family AT3G46510 28.947 3.86e-10 63.2
Fso18g01795 WGDA 1 435 U-box gene family AT5G37490 45.928 8.60e-126 370.0
Fso18g01914 . 19 786 U-box gene family AT5G65500 42.821 0.0 610.0
Fso18g02113 ACH,WGDA 4 828 U-box gene family AT2G23140 52.358 0.0 776.0
Fso18g02473 . 239 522 U-box gene family AT1G23030 24.642 1.31e-15 79.7
Fso18g02689 . 11 626 U-box gene family AT3G54850 64.286 0.0 768.0
Fso18g02983 . 22 833 U-box gene family AT4G25160 51.775 0.0 811.0
Fso10001659.1g00001 . 18 448 U-box gene family AT3G49810 70.737 0.0 595.0
Fso10000115.1g00001 . 544 823 U-box gene family AT2G23140 26.398 4.08e-18 86.3
Fso10000228.1g00006 . 9 272 U-box gene family AT3G18710 44.03 1.12e-61 198.0
Fso10000228.1g00007 . 296 409 U-box gene family AT5G09800 57.391 5.89e-43 143.0
Fso10000127.1g00006 . 1 421 U-box gene family AT1G49780 65.721 0.0 538.0
Fso10001695.1g00028 . 847 961 U-box gene family AT2G28830 70.94 1.98e-51 171.0
Fso10001695.1g00039 . 847 961 U-box gene family AT2G28830 70.94 1.98e-51 171.0
Fso10000119.1g00013 . 6 405 U-box gene family AT2G35930 33.659 9.34e-68 219.0
Fso10001062.1g00007 . 1 421 U-box gene family AT1G49780 63.507 0.0 514.0