AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fso2g00122 ATGGCTATAACTATAAGCTATACCCTTTTTCTTACCTTTTATTTTCTTCCATCTCATTTTGATATATCATATGCTATAACATGTGCAAATCACAAATTCACATCTAATAGAATCTACACTTCTTGTAAAGATTTGCCCCATTTACAAGCTAAGCTTCATTGGACCTACAACTCGACCGTGGGTGTAGCCAAGATCGCGTACCGGGCCCGACAAGGCGCGGGCGGTTGGGTCGCGTGGGCCATCAATCCGAACCAAATAGGTATGGTTGGGTCGGAAGCATTGGTGGCCTTTGTCAACAATAATGGAGGTGTGACAGTATACCCAACAACGATTACTAGTTACAGCCCGTCGATGCTGCCAGCTGATCTTAGCTTTCGGGTTTCGGGCCTCTCTGCTGAGTTCTTGAATAATGAGATCACCATTTACGCGACCGTGGGCCCGTTTGGAGGTGGGTCGGTTGTTAATCAAGTATGGCAAGCTGGGAATTTGGTTATAGATGGTGTCCCTCAAATGCATGCTGTTTCTCAACAAAATCTTCAATCAACAGGGGAACTTGATTTCTCTTCTGATTATAAAATAATAAAAGGACACACGTGCAAGTAG 603 44.11 MAITISYTLFLTFYFLPSHFDISYAITCANHKFTSNRIYTSCKDLPHLQAKLHWTYNSTVGVAKIAYRARQGAGGWVAWAINPNQIGMVGSEALVAFVNNNGGVTVYPTTITSYSPSMLPADLSFRVSGLSAEFLNNEITIYATVGPFGGGSVVNQVWQAGNLVIDGVPQMHAVSQQNLQSTGELDFSSDYKIIKGHTCK 200
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fso2g00122 200 PANTHER CYTOCHROME B561 AND DOMON DOMAIN-CONTAINING PROTEIN 7 191 - -
Fso2g00122 200 ProSiteProfiles DOMON domain profile. 48 161 IPR005018 -
Fso2g00122 200 CDD DOMON-CIL1-like 39 189 IPR045265 -
Fso2g00122 200 Pfam Protein of unknown function (DUF568) 88 187 IPR045265 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fso2g00122 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fso Fso-Chr1:67404570 Fso2g00122 Fso-Chr2:1803222 dispersed
Fso Fso-Chr2:1803222 Fso5g02036 Fso-Chr5:60047634 dispersed
Fso Fso-Chr2:1789554 Fso2g00122 Fso-Chr2:1803222 tandem