AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fso2g00139 ATGGCGGCAATACTGGCTTCTAACAGCTGCTATTGCCGTGATGTGGAATTGGTGAATCAAGGGAGAACAGCAGACAATCTCAGCTTCTCAAGATCAGTTTCTAATCAGAAGCTAGATAGGCGTGAATGTACTTCGAATTCGTCTAAAATTGAGAGATGTCGCAGGTTTCATGTTCAGATGCAGCAGACAGAATCACCGATGACATTTGGCACCAATGGTCGACCCGCGAAGCCCATGAAGTTGGGAAGCAAAGGTCAACCAATCACCATGGTTCCCATCAGTGAGGCGGTGAATATTAAACATACGTCAAAAAAAGGATCAGGAACAGTGAATGGATCGATACAAGTTGTTAATGGAACAAGTCTTGTTAAGAGAGAAATCACACCACCACTAGTTAAGTCTGTTAAAGTTAAAGAACCTACAGGATTCCAAGCTGAAGAATATAGGGTCTTGCCATCAGATGAAAGTTTCAAATGGGCAAATGAAAATTATAATTCAGTACATAGATCAATAGATGTGTGGTCTTTTGTTTTGTTTTTTCGTGTTCGTGTTCTACTTGACAATGCAAAGTGGGCATATCTTGGTTCCTTCACAGAAGAAAAACAGAAAAACAGAAGAAGAAAAACAGCTTCATGGTTAAGAGAACGTGTGCTTCAACTTGGTCCAACTTTTATAAAACTTGGCCAATTAGTCTCATCAAGATCAGATTTATTTCCTCATGAATTTGTTGATGAACTCGCCAAGTTACAGGACAGAGTACCAGCCTTCTCATCAGCAAAAGCAAAAGGTTTTATTGAGAAAGAACTTGGAGCTCCAATCGATGTACTATTCAGGGAATTTGAAGAACAACCTATTGCAGCTGCTAGTCTTGGTCAGGTACATCGTGCAATATTACATAACGGAGAGAAAGTAATCGTTAAAGTTCAAAGACCTGGTTTGAAGAAACTTTTTGACATTGATTTAAGAAATTTAAAGCTAGTTGCAGAGTATTTTCAAAGAAGTGAAACTCTTGGTGGCCCTACTAAGGATTGGATAGGTATCTATAATGAATGTGAAAAGATCTTATACCAGGAGATTGATTATATAAATGAAGGGAAAAATGCTGATAGATTTCGTCGAGATTTTCGTAATATAAAGTGGGTCCGAGTGCCTCAAGTATTCTGGGATTATACTGCAACCAAGGTGCTGACATTGGAGTATGTTCCAGGCATTAAAATCAACAATTTAGATGGGATAAAACAAAGGGGTTATAGTCGATCCCGCATCTCTTCACGTGCCATTGAATCATACTTGATTCAGATACTGAAAACAGGTTTCTTTCATGCCGATCCTCATCCTGGAAATCTTGCTATTGATGTGGATGAATCATTAATCTACTATGATTTGGTATGA 1392 38.65 MAAILASNSCYCRDVELVNQGRTADNLSFSRSVSNQKLDRRECTSNSSKIERCRRFHVQMQQTESPMTFGTNGRPAKPMKLGSKGQPITMVPISEAVNIKHTSKKGSGTVNGSIQVVNGTSLVKREITPPLVKSVKVKEPTGFQAEEYRVLPSDESFKWANENYNSVHRSIDVWSFVLFFRVRVLLDNAKWAYLGSFTEEKQKNRRRKTASWLRERVLQLGPTFIKLGQLVSSRSDLFPHEFVDELAKLQDRVPAFSSAKAKGFIEKELGAPIDVLFREFEEQPIAAASLGQVHRAILHNGEKVIVKVQRPGLKKLFDIDLRNLKLVAEYFQRSETLGGPTKDWIGIYNECEKILYQEIDYINEGKNADRFRRDFRNIKWVRVPQVFWDYTATKVLTLEYVPGIKINNLDGIKQRGYSRSRISSRAIESYLIQILKTGFFHADPHPGNLAIDVDESLIYYDLV 463
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fso2g00139 463 Pfam ABC1 atypical kinase-like domain 248 461 IPR004147 -
Fso2g00139 463 CDD ABC1-ADCK3-like 248 462 - -
Fso2g00139 463 PANTHER CHAPERONE-ACTIVITY OF BC1 COMPLEX CABC1 -RELATED 47 461 IPR050154 GO:0046467(PANTHER)|GO:0055072(PANTHER)|GO:1901031(PANTHER)
Fso2g00139 463 SUPERFAMILY Protein kinase-like (PK-like) 250 457 IPR011009 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fso2g00139 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fso Fso-Chr2:1956866 Fso9g00118 Fso-Chr9:2406802 dispersed
Fso Fso-Chr2:1956866 Fso6g01992 Fso-Chr6:47269430 wgd