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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fso2g00204 ATGGATCAAGTACCAGGATCAACAGGAACAAGTGCAGGATTCGCGTTGCGCCTCGGTCAAACCATATTCGCCTCAGCATCTCTTCTGTTCATGTCATTTGGTGTTCAATTCTACAGCTACACATCCTTCTGCTTCTTGGTGACGATCATGGGTCTGGTGATCCCATGGAGCTTCATATTAGCACTGATTGACGGATACTCCGTTCTCGTAACATCCCCAATTCGACGAAAGGGGATACTGTTCATAATCGTTGTTGGAGACTGGTTGTTGTCGACGCTCGCCCTCGGTGCCGCCTGTTCTGCCGCCGCGGTGGTGGATGTGTTGCTGACGGCCGGTGAGTTGGTCTGTGTTCCGAAGATCTGCAGCCGGTATTTGGTTTCTACTGTGTTTGCGTTTTTGTCATGGTTTTTGTGTATGGGTTCTTCTTTGTTTAATATGTGGATTCTTCCATCTTTGTGA 459 48.37 MDQVPGSTGTSAGFALRLGQTIFASASLLFMSFGVQFYSYTSFCFLVTIMGLVIPWSFILALIDGYSVLVTSPIRRKGILFIIVVGDWLLSTLALGAACSAAAVVDVLLTAGELVCVPKICSRYLVSTVFAFLSWFLCMGSSLFNMWILPSL 152
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fso2g00204 152 Pfam Casparian strip membrane protein domain 8 137 IPR006702 -
Fso2g00204 152 PANTHER CASP-LIKE PROTEIN 5B3 1 151 IPR045009 GO:0016020(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fso2g00204 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fso Fso-Chr15:61164350 Fso2g00204 Fso-Chr2:2873515 dispersed
Fso Fso-Chr2:2873515 Fso8g01543 Fso-Chr8:42244857 dispersed
Fso Fso-Chr2:2873515 Fso10g03051 Fso-Chr10:73230287 transposed