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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fso2g00239 ATGGCGAATATTATAGAAATGAGAGTGCATGTAGATTGCCCTGGATGCGAGAACAAGATCCGAAAAGCTCTTCAAAGACTCAAAGGAGTGGAGAACGTAGACATAGACATGGGGTTACAAAAGGTGACAGTCACTGGAATCGCCGACGAGAAGAAGGTGTTGAAGACGGTGAGAAAAACTGGCCGGCGAGCCGAGATATGGAACATACCCTACAACCCCGATATCCGTACCCATAACTACAATGTTAATCAATATGCTCAACAACAGCAACTACAGCAACAACAAAATGGTGGTTCGGGCCCAGGCCCCACTGCGACATTCTACACTCGACAACCGTCTTCTGCATCATCATATAACTACTACAAACACGGTTATGATGACCAGTATGTTTATAACCCGGTCCAGTCCTCGGGCTTGATCGGGCACCAGACGGGTGCTGCCTTCAGCGATGAGAACACTCATGCTGCCTGTAATATTATGTAG 483 47.2 MANIIEMRVHVDCPGCENKIRKALQRLKGVENVDIDMGLQKVTVTGIADEKKVLKTVRKTGRRAEIWNIPYNPDIRTHNYNVNQYAQQQQLQQQQNGGSGPGPTATFYTRQPSSASSYNYYKHGYDDQYVYNPVQSSGLIGHQTGAAFSDENTHAACNIM 160
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fso2g00239 160 SUPERFAMILY HMA, heavy metal-associated domain 4 68 IPR036163 GO:0046872(InterPro)
Fso2g00239 160 Gene3D - 2 66 - -
Fso2g00239 160 PANTHER COPPER TRANSPORT PROTEIN ATOX1-RELATED 4 160 IPR045181 GO:0046872(InterPro)
Fso2g00239 160 MobiDBLite consensus disorder prediction 88 109 - -
Fso2g00239 160 CDD HMA 6 65 IPR006121 GO:0046872(InterPro)
Fso2g00239 160 ProSiteProfiles Heavy-metal-associated domain profile. 2 65 IPR006121 GO:0046872(InterPro)
Fso2g00239 160 Pfam Heavy-metal-associated domain 8 62 IPR006121 GO:0046872(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fso2g00239 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fso Fso-Chr15:66806317 Fso2g00239 Fso-Chr2:3325116 dispersed
Fso Fso-Chr2:3325116 Fso7g01191 Fso-Chr7:18384348 dispersed
Fso Fso-Chr2:3325116 Fso15g01357 Fso-Chr15:56267096 transposed