AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fso2g00271 ATGGCTTCTTCTTCAACTTTCATTTTACTTTTTCTCTGTTTTCAACTGTTTTCCACCATTTCTGAAGCTGTTGTACCGGATTCAGAAACCTTCACTTACGTTAACGAAGGCGATTTCGGCGATTACATCGTCGAATACGATGCCAATTACCGCGCTCTTCCCCCTTTTAGCAACCCATTCCAACTATGCTTCTACAACACAACCCCTAACGCATTCACTCTAGCCCTCCGCATGGGCACGGTTCGATCCGAATCGCTCATGCGGTGGGTCTGGGAAGCGAACCGAGGGAACCCGGTTCGCGAAAACGCCACCCTGTCCTTCGGGACGGACGGCAACCTGGTCCTCACGGACGCCGACGGACGGGTCGTGTGGCAAACGAACACCGCGAACAAGGGTGTGGTTGGTTTTCAGGTGCTTCCCACGGGTAACATGGTTCTTCATGACGGTAAGGGTAATTACTTATGGCAAAGCTTTGATTCACCAACAGACACTCTTCTTGTGGGTCAAACGCTTCGAGCCGGTGGTCCGAATAAGCTCGTGAGCCGCCTTTCGGAGGCGAGCAACGTCGACGGACCGTATAGTTTGGTGATGGAGCCGAAAGGGTTAGCCATGTATTACAAAAGCCCGAACTCGCCTCGACCAATGCTTTACTGGTCGTCTAGCGAATGGTTCACCATTGACAAAGGTAGTTTGAGCAACCTAACGCTTACATCCGTCCCAGACACCGATGAGGGCTTTCTTTACTACTTGGCGTTCGAGTACTTCACCACAAACCCGACATCGTCTTCGAACCGCTTCATGGCGTATACGCGATACAACAACACGTTATCGTATCTTCGGCTGGGGATAGACGGAAACCTTAGGTTCTACACGTATAACCCGAACGTGCAAGGCGTGTCGTGGGAGTTGGTGTACACGTTTCTCGATCGCGATTCGATGGAAGGCGAGTGTCAGTTACCGGGGCGATGTGGGAACTTTGGGTTGTGTGAGGATAACCAGTGTGTCGCGTGCCCGACGCCGAATGGGCTAAGTGGTTGGAGCAAAGAGTGTGAGGTGAAAAAGGTGACATCTTGTAAAGCTAGTGACTTTTATTATTACAAGCTTGAAGGGGTTGATCATTTTATGATCAAGTACACTAGGGGTGACGCGACAAAACAAAGCGATTGCGAAAGCAAATGCACGAGGGATTGTAAGTGCATGGGGTACTTCTATCACACCGATCGATCGAGGTGTTGGATCGCTTATGATTTGAAAACATTAACACGAGTTGGAAACTCGACTCATTTGGCATATATCAAAACACCCAACAAGTAA 1314 49.62 MASSSTFILLFLCFQLFSTISEAVVPDSETFTYVNEGDFGDYIVEYDANYRALPPFSNPFQLCFYNTTPNAFTLALRMGTVRSESLMRWVWEANRGNPVRENATLSFGTDGNLVLTDADGRVVWQTNTANKGVVGFQVLPTGNMVLHDGKGNYLWQSFDSPTDTLLVGQTLRAGGPNKLVSRLSEASNVDGPYSLVMEPKGLAMYYKSPNSPRPMLYWSSSEWFTIDKGSLSNLTLTSVPDTDEGFLYYLAFEYFTTNPTSSSNRFMAYTRYNNTLSYLRLGIDGNLRFYTYNPNVQGVSWELVYTFLDRDSMEGECQLPGRCGNFGLCEDNQCVACPTPNGLSGWSKECEVKKVTSCKASDFYYYKLEGVDHFMIKYTRGDATKQSDCESKCTRDCKCMGYFYHTDRSRCWIAYDLKTLTRVGNSTHLAYIKTPNK 437
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fso2g00271 437 ProSiteProfiles Bulb-type lectin domain profile. 28 159 IPR001480 -
Fso2g00271 437 SMART blect-4 44 161 IPR001480 -
Fso2g00271 437 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE-THREONINE-PROTEIN KINASE SD2-5 52 435 IPR051343 -
Fso2g00271 437 CDD B-lectin 44 161 IPR001480 -
Fso2g00271 437 Pfam S-locus glycoprotein domain 229 342 IPR000858 GO:0048544(InterPro)
Fso2g00271 437 Pfam D-mannose binding lectin 90 172 IPR001480 -
Fso2g00271 437 Gene3D - 40 160 IPR036426 -
Fso2g00271 437 FunFam Os04g0303100 protein 80 214 - -
Fso2g00271 437 SUPERFAMILY alpha-D-mannose-specific plant lectins 69 219 IPR036426 -
Fso2g00271 437 ProSiteProfiles PAN-Apple domain profile. 358 435 IPR003609 -
Fso2g00271 437 PIRSF SLG 1 437 IPR035446 -
Fso2g00271 437 CDD PAN-AP-plant 357 435 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fso2g00271 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fso Fso-Chr2:3471008 Fso2g00271 Fso-Chr2:3833783 dispersed
Fso Fso-Chr2:3480572 Fso2g00271 Fso-Chr2:3833783 dispersed
Fso Fso-Chr2:3819179 Fso2g00271 Fso-Chr2:3833783 dispersed
Fso Fso-Chr2:3833783 Fso14g00234 Fso-Chr14:3634980 dispersed
Fso Fso-Chr2:3821999 Fso2g00271 Fso-Chr2:3833783 tandem