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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fso2g00276 ATGAAGGGTGATTGCATCAACTCCTTAAAGAGGTTATTAAGCTGTGGTTTCAATGATCTGCATGATGATGGTTTCGAGGGTTCAGTGAACGAGAATCGCATTTTTAGAGAGGTCTTCTACGGACAGGAAAGTGGTAAAATTGATGGAATTAGTAAAAAGTATGATGTAACCGGAGCAATAAATTTTGAAAATGACAAAAAGATCTCTAAAGACATCTCATTCTGTTCAGACAGTGGCAGTTCAGTCATGACAAATCAGGAAGACTTTCAGAATATGAAGGAAGATTTTGGACAGGGTGGCATATCTGAAGAGTTTGCTTTATTTACAAATGCCTCTGATATTGTACTTAAGCGAAGAAAGATGTCAGCTGAAGAATGTCGTGAGACTAAATATTATCCGGAAAAGTTAGTTAATTCTTCAATTTCATCAAAAACAGTCGATTTTAACTCAAGTGACCAGAAAACATATCATGTAAGTAAGGCTATTGCACCACCAGTTCAATGTTTCAAGAAAAGATGGAAAGATTCATCGTTCATTGAACTAGATAAAGATGAGTTATTAACTCCCCCTAAAGATTCTGCCACAAATCCTAAACCTATTTTGCGTTATCACACTTATTGCTTATTTAAAGCTGCAGGGTGGTTAATTGGGAGGCGTAACAGAAAAGGACACGGGAGTATATCTTCAAAACACCTGAAGGAAAGCCGATTCGGGAATTCCGTAGATCATGGAACATGTGTGGTCAAAGGTTAG 753 37.32 MKGDCINSLKRLLSCGFNDLHDDGFEGSVNENRIFREVFYGQESGKIDGISKKYDVTGAINFENDKKISKDISFCSDSGSSVMTNQEDFQNMKEDFGQGGISEEFALFTNASDIVLKRRKMSAEECRETKYYPEKLVNSSISSKTVDFNSSDQKTYHVSKAIAPPVQCFKKRWKDSSFIELDKDELLTPPKDSATNPKPILRYHTYCLFKAAGWLIGRRNRKGHGSISSKHLKESRFGNSVDHGTCVVKG 250
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fso2g00276 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
95389 Fso13g01780 Fso2g00276
96286 Fso2g00276 Fso4g00860
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fso Fso-Chr13:57700057 Fso2g00276 Fso-Chr2:3940776 wgd
Fso Fso-Chr2:3940776 Fso4g00860 Fso-Chr4:11461778 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Fso1g00179 ACH,WGDA 226 986 PHD Transcription Factor family AT2G36720 43.677 0.0 610.0
Fso1g00217 . 161 300 PHD Transcription Factor family AT3G53680 53.571 2.55e-43 162.0
Fso1g01816 . 130 272 PHD Transcription Factor family AT5G57380 30.675 2.44e-11 64.7
Fso1g02691 . 365 973 PHD Transcription Factor family AT5G58610 32.42 3.86e-93 309.0
Fso2g00155 . 611 654 PHD Transcription Factor family AT5G12400 41.304 7.21e-07 49.3
Fso2g00171 . 611 654 PHD Transcription Factor family AT5G12400 41.304 5.49e-07 45.1
Fso2g00276 ACH 10 52 PHD Transcription Factor family AT3G14980 52.174 3.82e-06 45.8
Fso2g00558 . 721 801 PHD Transcription Factor family AT3G14980 33.333 4.27e-07 51.6
Fso2g02085 ACH 1 341 PHD Transcription Factor family AT4G30200 50.146 3.72e-96 304.0
Fso2g02650 ACH,WGDA 312 926 PHD Transcription Factor family AT1G05380 45.238 4.71e-174 543.0
Fso3g00209 . 28 160 PHD Transcription Factor family AT5G58610 28.358 3.66e-08 54.7
Fso3g00218 . 717 801 PHD Transcription Factor family AT3G14980 31.193 4.36e-08 52.0
Fso3g00219 . 717 801 PHD Transcription Factor family AT3G14980 30.556 1.44e-07 54.7
Fso3g01659 . 27 160 PHD Transcription Factor family AT5G58610 28.261 1.02e-08 54.7
Fso3g02259 ACH 519 978 PHD Transcription Factor family AT2G36720 43.601 5.88e-141 429.0
Fso3g02261 ACH 512 970 PHD Transcription Factor family AT2G36720 41.469 3.22e-128 396.0
Fso3g02355 WGDA 1542 1704 PHD Transcription Factor family AT5G35210 86.503 4.77e-87 293.0
Fso4g00315 . 519 925 PHD Transcription Factor family AT1G05380 37.47 3.65e-88 291.0
Fso4g00860 ACH 536 1031 PHD Transcription Factor family AT3G14980 52.789 5.26e-175 533.0
Fso4g01067 . 1546 1704 PHD Transcription Factor family AT5G35210 29.24 6.01e-13 70.1
Fso4g01341 . 145 261 PHD Transcription Factor family AT5G57380 29.231 3.95e-08 53.9
Fso5g01899 . 165 301 PHD Transcription Factor family AT3G53680 51.825 1.15e-40 152.0
Fso5g02177 ACH,WGDA 312 945 PHD Transcription Factor family AT1G05380 45.242 1.00e-167 527.0
Fso6g01381 . 1 994 PHD Transcription Factor family AT4G14920 40.0 0.0 665.0
Fso7g00467 . 130 215 PHD Transcription Factor family AT5G57380 29.808 6.53e-10 60.8
Fso7g01011 . 130 217 PHD Transcription Factor family AT5G57380 30.303 2.23e-08 55.1
Fso8g01409 . 318 403 PHD Transcription Factor family AT5G22260 37.363 2.20e-06 48.9
Fso9g01586 WGDA 1542 1706 PHD Transcription Factor family AT5G35210 85.455 1.74e-86 291.0
Fso9g01712 . 219 973 PHD Transcription Factor family AT2G36720 43.937 0.0 644.0
Fso10g01275 . 1 506 PHD Transcription Factor family AT2G18880 36.364 1.82e-92 291.0
Fso10g02152 . 15 341 PHD Transcription Factor family AT5G22260 36.023 1.96e-62 208.0
Fso10g03345 ACH 679 760 PHD Transcription Factor family AT4G14920 33.333 3.23e-07 50.1
Fso11g00164 . 68 661 PHD Transcription Factor family AT5G22260 31.537 5.86e-87 285.0
Fso11g02007 . 344 984 PHD Transcription Factor family AT4G14920 52.08 0.0 679.0
Fso11g02462 ACH 1 685 PHD Transcription Factor family AT4G30200 44.971 2.02e-177 518.0
Fso12g00220 . 27 160 PHD Transcription Factor family AT5G58610 25.926 6.60e-06 47.4
Fso12g00804 . 29 124 PHD Transcription Factor family AT5G58610 30.208 6.37e-08 47.8
Fso12g01803 . 565 1028 PHD Transcription Factor family AT5G58610 44.737 1.22e-129 412.0
Fso12g02444 ACH,WGDA 187 973 PHD Transcription Factor family AT2G36720 42.645 0.0 607.0
Fso13g00856 . 1 1031 PHD Transcription Factor family AT3G14980 42.066 0.0 756.0
Fso13g01780 ACH 1 1031 PHD Transcription Factor family AT3G14980 42.16 0.0 757.0
Fso13g02304 . 46 597 PHD Transcription Factor family AT3G24440 47.759 5.67e-170 495.0
Fso14g00281 . 212 672 PHD Transcription Factor family AT5G22260 46.822 4.52e-141 417.0
Fso14g00282 . 15 199 PHD Transcription Factor family AT5G22260 57.219 3.20e-62 202.0
Fso14g00304 . 525 662 PHD Transcription Factor family AT5G22260 35.664 7.73e-19 80.9
Fso14g00305 . 17 413 PHD Transcription Factor family AT5G22260 33.949 2.05e-68 231.0
Fso14g00786 . 1545 1704 PHD Transcription Factor family AT5G35210 35.0 4.48e-22 99.4
Fso15g00245 . 1 1598 PHD Transcription Factor family AT5G12400 36.545 0.0 895.0
Fso15g00714 . 39 264 PHD Transcription Factor family AT5G57380 24.194 1.82e-11 65.5
Fso15g01138 . 685 760 PHD Transcription Factor family AT4G14920 32.099 1.44e-06 51.2
Fso15g02578 . 616 659 PHD Transcription Factor family AT2G36720 45.098 2.40e-06 50.4
Fso16g00544 . 41 831 PHD Transcription Factor family AT3G53680 52.473 0.0 849.0
Fso16g01009 ACH 681 760 PHD Transcription Factor family AT4G14920 32.941 7.25e-07 52.4
Fso10000938.1g00005 . 29 160 PHD Transcription Factor family AT5G58610 29.545 2.57e-10 55.1
Fso10000532.1g00002 . 45 596 PHD Transcription Factor family AT3G24440 42.981 1.89e-143 426.0
Fso10000318.1g00002 . 81 663 PHD Transcription Factor family AT5G22260 31.3 5.57e-84 277.0
Fso10000769.1g00008 . 130 264 PHD Transcription Factor family AT5G57380 24.837 1.36e-08 56.6
Fso10000276.1g00001 . 615 661 PHD Transcription Factor family AT5G22260 44.681 2.14e-06 49.7
Fso10000200.1g00002 . 10 52 PHD Transcription Factor family AT3G14980 52.174 3.82e-06 45.8
Fso10000749.1g00001 . 650 723 PHD Transcription Factor family AT5G36670 39.241 3.18e-06 50.1