AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fso2g00428 ATGGGTTGCAGAAATCGAGACGAAGAAGACGACAGAAGATCACCATCATCGTCAATTGTGAACGATGCGTTGCTGTTGACAACCATGTGTCTCATTGGGCTATCTGTCGATGTTCACATCAAAGATGGCTCTGTTTATTCTGGGATCTTTCATACTGCTTGTGTTGACGATCGTTATGCTATAGTGTTGAAACGAGCAAAGATGGTGAAGAAAGGGAGCTGTAATTCAAATGTGGCCAGTGAGGATGTAATAGGAACTCTTATAATCCAATCAGAGGATCTTGTTCAAGTAGTTGCAAAGAAAGTAAGAATTCGAGCAGATGGTTTTGCTGGACACGAAACTGAAGATGATACTGGGGCTGTTGCATGTTCCTTTCCTTCTAATGAAACTCCATTGACAGAATCAAATAGCAAGTCAAATGTCGGTCAACCACAGAGTAACCAAACAAGATTCCCATCTAGAAATGAAAACGGGTTTGCTAATGGATTCAAACCCGAGAACATTATTCACACAGCCGATGCTTCTGAAGTAAAGAACTCGGATACCAAAGGTTTAACAAAGAAGGAAGAAGGTCTGAATGACCCTAATGATAACAGAAAGAATGATACTCACACTAGTTCATCAGAACCATTAGTCACTTCATCAGCACCAAGTGCAACCGTCAATACAAATATCCTGAAGTCTAATCGAACCGTTAAGGAGTCTAAACTTAACCCTGGAGCAAAAACATTTTCTCCATCTTTTCCAAATAAAAGATCACCAACCCCTCCGACAATGGCAGCGGGTGCAAATCTTGCATACATTGCAGACAGTTATATTGGTGTACCCGCAGGACCACAGCCCGAGGTTGAAATCAGCCCATTTGCTCCTCCTCATCCTCCGCCCGTTAAGTTTGTTCCATATGGAGGCCATGATGTGCAACATCCTCCTCCTGTTGTTGGATACATGACAAACAGGAGTCAACCCATCAGATATGCAGGCCCGTATCATCCAGTTCAAACAGCACCTACCTATGTCCAACCAAATTCTCAGAATGTAATGGTTGGAAGATTGGGGCCTGTTGTCTATGTTCATCCTGTTTCTCAAGACATGGTCCCAAGCGGGAATAGCTTCTCCTCCATTCTAACTCCACATCAAATACATGTCCCTAAACACCAAGGAACAGCAGCGGGTCAAGCATTGCAGCTATGTGTGGCTCCACCGTTTATAGGTGGTGGCGGTCAACCGCCCTTTGTTTTACCAAGCCATATTCCAGTGTCACAACCGCCTTACCCCGTGATGCGCCCAATCACGGTCCCTGGATCTAATGGTTTTTTTGTATCAAAGTTTTCTTGA 1335 43.9 MGCRNRDEEDDRRSPSSSIVNDALLLTTMCLIGLSVDVHIKDGSVYSGIFHTACVDDRYAIVLKRAKMVKKGSCNSNVASEDVIGTLIIQSEDLVQVVAKKVRIRADGFAGHETEDDTGAVACSFPSNETPLTESNSKSNVGQPQSNQTRFPSRNENGFANGFKPENIIHTADASEVKNSDTKGLTKKEEGLNDPNDNRKNDTHTSSSEPLVTSSAPSATVNTNILKSNRTVKESKLNPGAKTFSPSFPNKRSPTPPTMAAGANLAYIADSYIGVPAGPQPEVEISPFAPPHPPPVKFVPYGGHDVQHPPPVVGYMTNRSQPIRYAGPYHPVQTAPTYVQPNSQNVMVGRLGPVVYVHPVSQDMVPSGNSFSSILTPHQIHVPKHQGTAAGQALQLCVAPPFIGGGGQPPFVLPSHIPVSQPPYPVMRPITVPGSNGFFVSKFS 444
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fso2g00428 444 MobiDBLite consensus disorder prediction 121 156 - -
Fso2g00428 444 MobiDBLite consensus disorder prediction 176 204 - -
Fso2g00428 444 MobiDBLite consensus disorder prediction 115 257 - -
Fso2g00428 444 PANTHER ATAXIN 2-RELATED 135 421 IPR045117 GO:0003723(InterPro)|GO:0003729(PANTHER)|GO:0010494(PANTHER)|GO:0034063(PANTHER)
Fso2g00428 444 MobiDBLite consensus disorder prediction 205 249 - -
Fso2g00428 444 Pfam Ataxin 2 SM domain 21 100 IPR025852 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fso2g00428 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
2607239 Fso Fso2g00428 Fso-Chr2:5775637 Fso6g01720 Fso-Chr6:39804593