AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fso2g00442 ATGGCGTTTCCAATTTTTGATGGAAGTGTATACCTATCAATCTGGACTCCTAATTCTAAGGATAAAGACAGCAGTTCACCAACATTGGATGACGTGAACAGTGATATTATACCATCAGCATCCGTGCTAAAGCAATTGGCCATAGGTGTTGAGACCACAAAAGTTATAAAGTCAATGAAGGATTTGATGATATCATCAAGAGATTCTTCACCAGTGAAAGAGAGATCTGGTTTGAGCTTATCTGCCGTGAAGTCATTTGTAGTTGGGGAGAAAGAAGATAAGTTTGCTGCTGAGTTTGGTCGTGATGATAAAGTGATGTCCTTTATACGTTTGCTCATGGATCCAGAAGGACATATTCATAGAAGAAAAGCTAGATCTCATTTGGATATGACTACAATCATTACTAATTTTTCCAAAGAACTTCATGGTGTTCCTCCAGAAAGCTTTGTTCCAGAGCTTGCTGAAGCCATTGGAAGCTTAAAAACTTTGAAGAAAATGGCACTGTTATGGTCTAGGGTTGTTGTTGAATTGAGAAGGCTTTGGTCTGAAGGGAAACATATTCCTGGCATCCCACCAGATGAAATTCCAAATTTAAATTCCTGTCTGTTACATCAGCAGTTGCAGGTTATCAACTGCTGTATTTCTAGGAAACGACGCAGCGCGATTGCCACTGAATCATTAAATTCTGTTTTAAAACAAGCTAATTGTAATGCTGACATGCCACTTTCTTCTGGAGATATTTGTCCAGAAAGCCCTCTTCTGTATGCTCGAGTTAGCTCTGGCGAACTTGTACTGCGATTAGGAGTTGACAAACGACTTGAAAACACAACACTGTTGGATACTAGTGAACCTGTATATATCCCTATTATGCAGGAATGGCCTTTGCTCACAGAAGATGTTATTAAAGAAACAGAAGAATTTGTATTACGTACAGGGAGTGTTGGTGCAGGGTGCTCTCAACTTCTCTCCGATATGCAGGCTTTCAAGGCAGCAAATCCAGGGTGCATATTAGAAGATTTTGTAAGATGGCACTCACCCCCTGATTGGACAGATGATGAAAGTAAAGAAATTAGCGATGGTGATATTTCGCCTTCTAGAGGACATCTGAGTATTCGTATGCAGAAAGAAGGTAATTTATGGCGGGAACTATGGCAAACCGCAAAACCAGTACCTGCTGTTAGACAGTCTCCATTATACTATGAGGATTTATCTGTTGAAGGGATTCTGCATGGGCTGGAGAATATATCACCTTCTGGTTTGTTTGAACAGTTGTTTCTTTCTCTTCTCAGTTCAGGATGTGCAATTGCTGAGGCCAGAATTTTGAGTAATGAATTTCTGTACAAGATGTTTAAAGAATGCAAAGACTATATTATTCTTATTTGTCAAAGCAAAAGTTGGTTCCAGAAAGCTCAAGATATATGCCAGGTGTATGAGACGATGGCAATGATGGCATTGGACCCAGATAAGTTTATAAGGCTACTCAGCAATCCACAGCCTGATCAGACTCCTACAAAGAAAGAACCAAATAATCTTTGGAAAACACCATCAAAGAACCAAAAAGACAACATAACTGCGCAATCCTCAACAATTTTTTCAAGGAAGCCACCAAAATCGATACTCTGCTAA 1626 39.61 MAFPIFDGSVYLSIWTPNSKDKDSSSPTLDDVNSDIIPSASVLKQLAIGVETTKVIKSMKDLMISSRDSSPVKERSGLSLSAVKSFVVGEKEDKFAAEFGRDDKVMSFIRLLMDPEGHIHRRKARSHLDMTTIITNFSKELHGVPPESFVPELAEAIGSLKTLKKMALLWSRVVVELRRLWSEGKHIPGIPPDEIPNLNSCLLHQQLQVINCCISRKRRSAIATESLNSVLKQANCNADMPLSSGDICPESPLLYARVSSGELVLRLGVDKRLENTTLLDTSEPVYIPIMQEWPLLTEDVIKETEEFVLRTGSVGAGCSQLLSDMQAFKAANPGCILEDFVRWHSPPDWTDDESKEISDGDISPSRGHLSIRMQKEGNLWRELWQTAKPVPAVRQSPLYYEDLSVEGILHGLENISPSGLFEQLFLSLLSSGCAIAEARILSNEFLYKMFKECKDYIILICQSKSWFQKAQDICQVYETMAMMALDPDKFIRLLSNPQPDQTPTKKEPNNLWKTPSKNQKDNITAQSSTIFSRKPPKSILC 541
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fso2g00442 541 PANTHER RAB3 GTPASE-ACTIVATING PROTEIN CATALYTIC SUBUNIT 32 519 IPR045700 GO:0005096(PANTHER)|GO:0005096(InterPro)|GO:0043547(PANTHER)|GO:0043547(InterPro)
Fso2g00442 541 MobiDBLite consensus disorder prediction 496 527 - -
Fso2g00442 541 Pfam Rab3 GTPase-activating protein catalytic subunit 266 413 IPR026147 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fso2g00442 K18270 Rab3 GTPase-activating protein catalytic subunit
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fso Fso-Chr2:5898584 Fso6g01706 Fso-Chr6:39578494 wgd