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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fso2g00452 ATGGTGGTTGTTAAGGGTTTAAGCACGTTCAAGAGTAGGGTTTCGGGAGAACGAGAGACGAGGAAGAGTGGTGGATTTAGAAGTTTGAAGGTGTATACAGAAGATGTCAAGGTGAAGATTAATGGTAGAGATCATGCCACTGAAACGAAAAGGAAATCTATTCCAGTCAAAGCTGAATCTAGTCATATCCAGGCCAATTGTCAAAAGGAGGCCCTCAACAAGTTGGATAAGATTAATGGGAAAAACATCAACTCTGCTCAAACAAAAGTAGGAAGAAAAGTATTGGCGGATATCAGCAATTCCAGGGGTGTTTTTCAGAAGAATGCAACTGTTGATGGCTCCAAACCTGGGAAAGGTAAAATGGAAAGGATGACATATTCACAACGGACCTCAGTGTCATCAGCCGAGGATCTGAAGGTCTTCAATGGTAATTCAAAGACAAAAGGTCAAGAAACTGTTGGTTATGTAACAAGGAAATCTACAAGGAGTTATTGCCCACCACAAAGGAAATCTTTACCAGTTCTAAAGAATGTTGACAAGAAGGAGATATCTGATATCAAGAAAGGAAATAAGGAAAATAACTTGAACAAGGGAACACATGGTTTCTTTGTTAAACCTAAAGTTGGCACGACAATTGTACCACAAGTAAGCAATACTAGGGACTACCGTTGGAAGGATAGAGTTAGTGATGGATGCATAAAATTGGCATCAGATGGTCAACAACCAGGGGACAAACAGAGACGACTGTCTAGGATATCAATGAAGCCAACCGTGAAAACGACAGTTGGCATTCCCAAAGCTCAAAGGCCATCAAGAACCACTTCTGTTTTTACCAAAGCTCAAAGGCCATCAAGAAGCACTTCCGTTTTTACCAAAGCTCAAATGCCTTCAAGAACCACTTCTGTTTTTACCAAATCGACATTTACAGCTTCAGTTTTATCCAAAAAAACTGAAGAAACATCAAAGTCTGAATCTATTTCTTGTAAGCAAATTGCACAAGGAGTCACATTAGATACAAGTACATCAAAACTCACTGCCAAGGGGAAATCTGGTCGCCGAAAATCCTACACATCTTTACTAATGGAAAGAACAAAGCTTTTAACGGATCGGGGTAGTGTCACCAAGGAGGAAATCCTACCCGACATTTATGATGATGGCAATGAACTTGAAGTTGCTGAATATGTTGATGAGATCTATCAGCACTATTGGGTCACCGAGGCACATAATCAACCACTGAAAAACTATATGGAGATCCAAACAGATATTACTCCTCAAATGCGGGGCATACTGATCAATTGGCTAATAGAAGTACATCTGAAGTTTGATTTAATGCAAGAGACGCTTTATCTGATGGTCACACTCTTAGACTTTTACTTGTCTGCTGTGACGATTAAGAAAACTGAAATGCAACTAGTTGGTCTCACATCACTGTTACTAGCATCAAAGTATGAGGATTTTTGGCATCCACAGGTTATGGAATTAATTAGTATCTCCGCAGAGACATACACAAAAGAGCAAATGCTTGGAATGGAGACAACTATTTTAAAGAAGATAGACTTCCGTCTTAATTTGCCTACACCTTATGTTTTCATGCTGAGATTTCTTAAAGCTGCACAGGGAGGCAAAAAGTTTGAAAACCTAGCATACTTCCTCATTGAGCTGTGCTTGGTGGAATATGATGCCTTACACTACAAACCATCATTACTATGTGCATCAGCTATATATGTTGCTAGATGTACCCTGCATTTGGCCCCAGCTTGGACCCCACTTCTATGCAAACATTCTAAGTATCAAGAATTTCAGATCAGGGACTGTGCTGAGATGATCTTGGGATTTCACCAAGCTGCAAGGAAATCAGTTTTAAAAGTGACATATGACAAATACACGCGCGATAAAAACTGCAAAGTCGCACTGATCAAACCTCTCGACAGGCTTCCACCTCCGTAG 1947 40.16 MVVVKGLSTFKSRVSGERETRKSGGFRSLKVYTEDVKVKINGRDHATETKRKSIPVKAESSHIQANCQKEALNKLDKINGKNINSAQTKVGRKVLADISNSRGVFQKNATVDGSKPGKGKMERMTYSQRTSVSSAEDLKVFNGNSKTKGQETVGYVTRKSTRSYCPPQRKSLPVLKNVDKKEISDIKKGNKENNLNKGTHGFFVKPKVGTTIVPQVSNTRDYRWKDRVSDGCIKLASDGQQPGDKQRRLSRISMKPTVKTTVGIPKAQRPSRTTSVFTKAQRPSRSTSVFTKAQMPSRTTSVFTKSTFTASVLSKKTEETSKSESISCKQIAQGVTLDTSTSKLTAKGKSGRRKSYTSLLMERTKLLTDRGSVTKEEILPDIYDDGNELEVAEYVDEIYQHYWVTEAHNQPLKNYMEIQTDITPQMRGILINWLIEVHLKFDLMQETLYLMVTLLDFYLSAVTIKKTEMQLVGLTSLLLASKYEDFWHPQVMELISISAETYTKEQMLGMETTILKKIDFRLNLPTPYVFMLRFLKAAQGGKKFENLAYFLIELCLVEYDALHYKPSLLCASAIYVARCTLHLAPAWTPLLCKHSKYQEFQIRDCAEMILGFHQAARKSVLKVTYDKYTRDKNCKVALIKPLDRLPPP 648
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fso2g00452 648 SUPERFAMILY Cyclin-like 387 523 IPR036915 -
Fso2g00452 648 Gene3D - 412 516 - -
Fso2g00452 648 Gene3D - 517 646 - -
Fso2g00452 648 Pfam Cyclin, N-terminal domain 397 523 IPR006671 -
Fso2g00452 648 PANTHER CYCLINS 377 628 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Fso2g00452 648 FunFam Cyclin N-terminal domain containing 2 412 520 - -
Fso2g00452 648 CDD CYCLIN-CCNB1-like-rpt1 391 520 - -
Fso2g00452 648 SMART Cyclin-C-2 525 642 IPR004367 -
Fso2g00452 648 Pfam Cyclin, C-terminal domain 525 641 IPR004367 -
Fso2g00452 648 SUPERFAMILY Cyclin-like 525 644 IPR036915 -
Fso2g00452 648 SMART cyclin-7 432 516 IPR013763 -
Fso2g00452 648 SMART cyclin-7 529 611 IPR013763 -
Fso2g00452 648 FunFam putative cyclin-B3-1 isoform X3 521 646 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fso2g00452 K21777 G2/mitotic-specific cyclin-B, other
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Fso Fso-Chr1:72742241 Fso2g00452 Fso-Chr2:6001962 dispersed
Fso Fso-Chr2:6001962 Fso4g00244 Fso-Chr4:3905613 dispersed
Fso Fso-Chr2:6001962 Fso18g01937 Fso-Chr18:66026924 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Fso1g00385 WGDA 1 82 Core Cell Cycle gene family AT2G27960 96.341 3.49e-57 169.0
Fso1g02039 . 2 309 Core Cell Cycle gene family AT3G54180 80.844 0.0 520.0
Fso1g02398 ACH 1 221 Core Cell Cycle gene family AT5G48820 44.351 5.23e-43 142.0
Fso1g02419 ACH 99 259 Core Cell Cycle gene family AT5G27620 28.235 7.70e-10 56.6
Fso1g02792 . 1 436 Core Cell Cycle gene family AT5G06150 53.587 1.07e-150 434.0
Fso2g00041 . 14 280 Core Cell Cycle gene family AT4G34160 50.172 2.50e-94 285.0
Fso2g00307 . 18 379 Core Cell Cycle gene family AT5G10270 52.459 2.23e-121 369.0
Fso2g00452 . 22 647 Core Cell Cycle gene family AT1G16330 44.41 4.97e-155 460.0
Fso2g02528 ACH 55 273 Core Cell Cycle gene family AT5G27620 24.017 6.05e-13 65.9
Fso2g02549 ACH,WGDA 1 222 Core Cell Cycle gene family AT5G48820 43.089 1.22e-48 157.0
Fso2g02830 . 10 290 Core Cell Cycle gene family AT3G48750 36.644 2.21e-56 184.0
Fso3g00037 WGDA 42 302 Core Cell Cycle gene family AT5G65420 46.296 1.67e-76 236.0
Fso3g00084 . 21 379 Core Cell Cycle gene family AT5G10270 45.902 5.66e-101 314.0
Fso3g00316 . 18 366 Core Cell Cycle gene family AT5G10270 52.286 1.24e-116 353.0
Fso3g00638 . 75 266 Core Cell Cycle gene family AT5G27620 23.348 8.54e-08 51.2
Fso3g00856 . 20 280 Core Cell Cycle gene family AT4G37630 33.088 1.42e-31 117.0
Fso3g01011 . 20 460 Core Cell Cycle gene family AT1G44110 58.65 0.0 545.0
Fso3g01670 . 1 294 Core Cell Cycle gene family AT3G48750 37.838 1.60e-68 218.0
Fso4g00244 . 1 377 Core Cell Cycle gene family AT2G26760 53.015 4.15e-141 406.0
Fso4g00312 . 12 357 Core Cell Cycle gene family AT4G28980 23.981 1.74e-16 81.6
Fso4g00514 . 75 244 Core Cell Cycle gene family AT5G27620 24.084 3.87e-06 47.0
Fso4g00554 . 1 290 Core Cell Cycle gene family AT3G48750 36.177 3.61e-66 212.0
Fso4g00630 . 18 363 Core Cell Cycle gene family AT5G10270 52.161 1.50e-119 361.0
Fso5g00002 . 256 372 Core Cell Cycle gene family AT5G11300 64.957 1.32e-48 159.0
Fso5g00382 ACH,WGDA 1 353 Core Cell Cycle gene family AT5G43080 57.527 5.06e-151 428.0
Fso5g00802 . 18 357 Core Cell Cycle gene family AT5G10270 48.105 2.31e-103 322.0
Fso5g01499 . 64 331 Core Cell Cycle gene family AT2G22490 46.35 1.06e-73 230.0
Fso5g02311 . 6 391 Core Cell Cycle gene family AT1G18040 76.726 0.0 599.0
Fso6g00011 . 12 497 Core Cell Cycle gene family AT1G02970 53.086 2.80e-179 508.0
Fso6g00496 . 1 982 Core Cell Cycle gene family AT3G12280 67.231 0.0 1345.0
Fso6g00716 ACH,WGDA 1 222 Core Cell Cycle gene family AT5G48820 47.479 1.58e-53 170.0
Fso6g01023 . 1 317 Core Cell Cycle gene family AT5G27620 60.815 2.43e-139 395.0
Fso6g02162 . 89 195 Core Cell Cycle gene family AT1G49620 42.241 1.66e-22 89.0
Fso7g00538 . 1 294 Core Cell Cycle gene family AT3G48750 86.735 0.0 538.0
Fso8g00699 WGDA 149 195 Core Cell Cycle gene family AT1G49620 65.957 7.41e-20 81.6
Fso8g00796 . 52 283 Core Cell Cycle gene family AT1G70210 44.068 3.62e-55 180.0
Fso8g01220 . 18 367 Core Cell Cycle gene family AT5G10270 50.847 1.95e-115 353.0
Fso8g01906 . 8 302 Core Cell Cycle gene family AT3G54180 25.519 1.25e-12 67.4
Fso9g00040 WGDA 42 302 Core Cell Cycle gene family AT5G65420 46.468 4.73e-75 232.0
Fso9g00491 . 18 390 Core Cell Cycle gene family AT5G10270 44.8 5.25e-104 324.0
Fso9g01191 . 1 434 Core Cell Cycle gene family AT5G25380 50.74 2.54e-148 429.0
Fso9g01901 . 1 220 Core Cell Cycle gene family AT5G48820 40.909 9.09e-35 122.0
Fso10g01289 . 76 308 Core Cell Cycle gene family AT2G22490 48.536 2.08e-63 203.0
Fso10g02013 WGDA 11 347 Core Cell Cycle gene family AT5G67260 43.429 1.70e-86 263.0
Fso10g02102 ACH 12 427 Core Cell Cycle gene family AT2G17620 57.314 4.26e-142 409.0
Fso10g02192 . 1 479 Core Cell Cycle gene family AT5G10270 77.984 0.0 738.0
Fso10g02948 . 18 357 Core Cell Cycle gene family AT5G10270 45.294 1.04e-99 311.0
Fso10g03084 . 87 194 Core Cell Cycle gene family AT1G49620 37.5 4.11e-16 72.0
Fso10g03125 ACH 63 367 Core Cell Cycle gene family AT5G67260 47.319 3.81e-93 281.0
Fso10g03445 ACH 1 353 Core Cell Cycle gene family AT5G43080 56.593 1.88e-141 404.0
Fso10g03805 . 16 310 Core Cell Cycle gene family AT1G20930 47.368 1.50e-85 267.0
Fso10g03857 . 18 357 Core Cell Cycle gene family AT5G10270 52.199 4.89e-117 355.0
Fso10g03967 . 19 459 Core Cell Cycle gene family AT1G80370 51.535 2.40e-142 413.0
Fso11g00651 . 1 294 Core Cell Cycle gene family AT3G48750 36.364 8.54e-67 214.0
Fso11g00714 . 18 363 Core Cell Cycle gene family AT5G10270 52.161 1.49e-120 363.0
Fso11g01608 . 18 379 Core Cell Cycle gene family AT5G10270 49.185 2.99e-116 357.0
Fso11g02993 . 8 478 Core Cell Cycle gene family AT4G28980 56.604 0.0 531.0
Fso12g01600 . 1 434 Core Cell Cycle gene family AT5G06150 53.07 8.33e-152 437.0
Fso12g01624 . 4 289 Core Cell Cycle gene family AT5G02110 29.352 1.27e-36 133.0
Fso12g02066 . 10 290 Core Cell Cycle gene family AT3G48750 35.739 5.51e-57 186.0
Fso12g02278 WGDA 1 82 Core Cell Cycle gene family AT2G27960 96.341 3.11e-57 169.0
Fso13g01322 . 20 165 Core Cell Cycle gene family AT1G76540 33.333 2.05e-19 83.2
Fso13g01353 . 20 313 Core Cell Cycle gene family AT1G76540 34.122 2.08e-55 184.0
Fso13g01560 . 6 354 Core Cell Cycle gene family AT5G43080 49.861 3.97e-120 350.0
Fso13g01620 WGDA 90 195 Core Cell Cycle gene family AT1G49620 44.248 3.36e-21 85.1
Fso14g00581 . 17 371 Core Cell Cycle gene family AT5G64960 44.78 3.99e-94 301.0
Fso14g01134 ACH 19 304 Core Cell Cycle gene family AT1G76540 25.816 1.67e-26 107.0
Fso14g01226 ACH,WGDA 1 353 Core Cell Cycle gene family AT5G43080 59.836 1.03e-154 437.0
Fso14g02494 . 5 382 Core Cell Cycle gene family AT1G73690 74.074 0.0 568.0
Fso15g00053 . 18 470 Core Cell Cycle gene family AT5G63610 76.119 0.0 714.0
Fso15g01005 . 35 429 Core Cell Cycle gene family AT1G20610 57.357 6.29e-155 442.0
Fso15g01017 . 35 429 Core Cell Cycle gene family AT1G20610 57.895 5.07e-155 443.0
Fso15g01484 ACH,WGDA 3 358 Core Cell Cycle gene family AT5G67260 41.979 9.21e-88 267.0
Fso15g02213 . 18 363 Core Cell Cycle gene family AT5G10270 50.72 2.49e-118 357.0
Fso15g02241 . 1 434 Core Cell Cycle gene family AT5G25380 50.435 1.50e-140 408.0
Fso15g02493 . 18 401 Core Cell Cycle gene family AT5G10270 50.26 1.45e-124 375.0
Fso16g00867 WGDA 7 322 Core Cell Cycle gene family AT4G37630 33.333 6.82e-50 166.0
Fso16g02020 WGDA 1 430 Core Cell Cycle gene family AT1G76310 55.275 1.02e-150 432.0
Fso17g00999 . 20 425 Core Cell Cycle gene family AT5G10270 41.363 4.45e-97 303.0
Fso17g01483 . 61 275 Core Cell Cycle gene family AT4G34160 46.544 9.51e-64 204.0
Fso17g01683 ACH 19 304 Core Cell Cycle gene family AT1G76540 26.048 6.90e-27 108.0
Fso17g01702 . 21 333 Core Cell Cycle gene family AT5G10270 47.188 4.81e-86 275.0
Fso17g01753 . 18 401 Core Cell Cycle gene family AT5G10270 41.505 7.85e-100 310.0
Fso18g00084 WGDA 1 430 Core Cell Cycle gene family AT1G76310 60.046 1.36e-168 478.0
Fso18g01358 . 1 220 Core Cell Cycle gene family AT5G48820 42.917 4.38e-45 148.0
Fso18g01937 ACH 4 429 Core Cell Cycle gene family AT1G20610 52.174 4.72e-150 431.0
Fso18g02093 WGDA 7 322 Core Cell Cycle gene family AT4G37630 33.542 2.00e-47 160.0
Fso18g02099 . 12 304 Core Cell Cycle gene family AT1G76540 31.31 1.76e-41 147.0
Fso18g02110 . 12 304 Core Cell Cycle gene family AT1G76540 29.773 6.12e-43 151.0
Fso18g02142 . 176 222 Core Cell Cycle gene family AT5G48820 59.574 3.81e-15 69.7
Fso10000638.1g00001 . 11 315 Core Cell Cycle gene family AT1G20930 83.442 0.0 543.0
Fso10000638.1g00002 . 9 53 Core Cell Cycle gene family AT1G76540 86.667 5.18e-22 84.3
Fso10000638.1g00003 . 101 309 Core Cell Cycle gene family AT1G20930 86.124 3.77e-139 390.0
Fso10000642.1g00005 . 8 302 Core Cell Cycle gene family AT3G54180 25.519 1.25e-12 67.4
Fso10000140.1g00001 . 42 302 Core Cell Cycle gene family AT5G65420 46.296 1.67e-76 236.0
Fso10000223.1g00005 . 14 261 Core Cell Cycle gene family AT4G34160 50.549 1.44e-88 267.0
Fso10000606.1g00005 . 11 309 Core Cell Cycle gene family AT1G20930 86.957 0.0 558.0
Fso10000606.1g00006 . 11 315 Core Cell Cycle gene family AT1G20930 84.918 0.0 550.0
Fso10001200.1g00003 . 19 304 Core Cell Cycle gene family AT1G76540 25.816 1.24e-26 107.0
Fso10000315.1g00005 . 164 287 Core Cell Cycle gene family AT3G48750 31.944 7.35e-11 61.2