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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Fso2g00465 ATGGCATCTGCCTTCCTTTCAAAAACACTCTTTGCTCGTCGTTTCGTTTCATCCATCGGAATCAACCAAAACCCCCAAAAATTAGCTTCAGTTTTCTTTAAGAAGCCTCTTCAATCGTGGGCTAGTCCAATCCATACGGCATATAGGAGGTCTACCTTGGTTCGTGGTGATATGGCTACAAATGTGGCTGGATCCACAGCTTATTTTTCAACACGGTCCATGTCGACTGGGGAGCCTGTTGTTTCAGTTGACTGGCTCCATGCCAATCTGCGTGAGCCTGATTTGAAGGTGCTGGATGCATCCTGGTACATGCCTGATGAACAAAGAAATCCGCTCCAGGAGTACCAGGTTGCCCACATCCCAGGTGCTCTTTTCTTTGATGTAGACGGGATATCAGATCGAACTACTAATCTACCACACATGTTGCCATCTGGGGAAGCATTTGCTGCTGCTGTTTCTGCTCTTGGTATTGAGAACAAAGATGGAGTTGTTGTTTATGATGGTAAAGGGATCTTCAGTGCTGCTCGTGTCTGGTGGATGTTCCGAGTTTTTGGACATGATAGAGTATGGGTGTTGGATGGAGGGCTTCCTAGATGGCGTGCTTCTGGATTTGATGTTGAGTCTAGTGCTTCTAGTGATTCAATTTTGAAAGCTAGTGCTGCAAGCGAGGCAATAGAGAAAGTATACCACGGCCAGCCTGTTGGTCCAGTTACATTCCAAACAAAATATCAGCCGCATCTTGTATGGACACTCGAACAGGTTAAAAAGAACATCGAGGACCAATCATATCAACACATAGATGCTCGATCAAAAGCCAGGTTTGATGGTGTTGCACCTGAGCCTCGAAAAGGAATAAGAAGCGGCCATGTGCCTAGGAGTAAGTGCATCCCTTTTGCTCAGATGTTAGACAGTTCACAGACACTGTTATCTGCAGACCAGCTCAAGAAAAAGTTTGAACAAGAGGGGATCGCATTGGACAAACCTGTCATGACTTCATGTGGGACTGGAGTTACTGCATGCATTCTTGCTTTGGGACTCCATCGACTTGGGAAGACAGATGTTCCGGTTTATGATGGATCTTGGACAGAATGGGGAGCACAAGAAGAAGTTCCCGTCGCAACTTCAAGTTCAACTTCTTGA 1140 45.96 MASAFLSKTLFARRFVSSIGINQNPQKLASVFFKKPLQSWASPIHTAYRRSTLVRGDMATNVAGSTAYFSTRSMSTGEPVVSVDWLHANLREPDLKVLDASWYMPDEQRNPLQEYQVAHIPGALFFDVDGISDRTTNLPHMLPSGEAFAAAVSALGIENKDGVVVYDGKGIFSAARVWWMFRVFGHDRVWVLDGGLPRWRASGFDVESSASSDSILKASAASEAIEKVYHGQPVGPVTFQTKYQPHLVWTLEQVKKNIEDQSYQHIDARSKARFDGVAPEPRKGIRSGHVPRSKCIPFAQMLDSSQTLLSADQLKKKFEQEGIALDKPVMTSCGTGVTACILALGLHRLGKTDVPVYDGSWTEWGAQEEVPVATSSSTS 379
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Fso2g00465 379 CDD TST-Repeat-2 250 366 - -
Fso2g00465 379 Gene3D - 73 215 IPR036873 -
Fso2g00465 379 SMART rhod-4 249 370 IPR001763 -
Fso2g00465 379 SMART rhod-4 81 205 IPR001763 -
Fso2g00465 379 ProSiteProfiles Rhodanese domain profile. 91 208 IPR001763 -
Fso2g00465 379 SUPERFAMILY Rhodanese-Cell cycle control phosphatase 78 210 IPR036873 -
Fso2g00465 379 ProSitePatterns Rhodanese C-terminal signature. 354 364 IPR001307 GO:0004792(InterPro)
Fso2g00465 379 FunFam Sulfurtransferase 244 375 - -
Fso2g00465 379 CDD TST-Repeat-1 80 203 - -
Fso2g00465 379 ProSitePatterns Rhodanese signature 1. 115 126 IPR001307 GO:0004792(InterPro)
Fso2g00465 379 ProSiteProfiles Rhodanese domain profile. 259 373 IPR001763 -
Fso2g00465 379 FunFam Sulfurtransferase 73 215 - -
Fso2g00465 379 PANTHER THIOSULFATE SULFERTANSFERASE 76 376 IPR045078 GO:0004792(PANTHER)|GO:0005739(PANTHER)|GO:0016783(InterPro)
Fso2g00465 379 Pfam Rhodanese-like domain 250 366 IPR001763 -
Fso2g00465 379 Pfam Rhodanese-like domain 82 201 IPR001763 -
Fso2g00465 379 SUPERFAMILY Rhodanese-Cell cycle control phosphatase 252 375 IPR036873 -
Fso2g00465 379 Gene3D - 244 376 IPR036873 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Fso2g00465 K01011 thiosulfate/3-mercaptopyruvate sulfurtransferase [EC:2.8.1.1 2.8.1.2]
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Fso1g01875 . 82 198 Sulfurtransferasese/Rhodanese gene family AT3G08920 68.376 1.34e-60 184.0
Fso2g00465 . 1 379 Sulfurtransferasese/Rhodanese gene family AT1G79230 70.976 0.0 570.0
Fso3g00154 . 94 299 Sulfurtransferasese/Rhodanese gene family AT5G19370 68.269 4.16e-106 309.0
Fso3g00155 . 94 299 Sulfurtransferasese/Rhodanese gene family AT5G19370 68.269 4.16e-106 309.0
Fso3g00341 . 72 261 Sulfurtransferasese/Rhodanese gene family AT5G55130 24.424 9.82e-11 61.6
Fso3g02243 WGDA 17 145 Sulfurtransferasese/Rhodanese gene family AT5G03455 65.649 1.18e-61 184.0
Fso4g00071 . 1 456 Sulfurtransferasese/Rhodanese gene family AT4G01050 51.404 8.00e-136 398.0
Fso5g00215 . 1 292 Sulfurtransferasese/Rhodanese gene family AT4G24750 65.217 3.46e-140 395.0
Fso5g01483 . 343 564 Sulfurtransferasese/Rhodanese gene family AT1G09280 25.311 8.05e-15 72.0
Fso5g01484 . 342 577 Sulfurtransferasese/Rhodanese gene family AT1G09280 28.287 1.44e-17 79.3
Fso5g01754 . 1 233 Sulfurtransferasese/Rhodanese gene family AT2G42220 65.678 1.93e-111 317.0
Fso8g01290 . 44 222 Sulfurtransferasese/Rhodanese gene family AT4G27700 81.006 5.94e-109 310.0
Fso9g00224 . 1 464 Sulfurtransferasese/Rhodanese gene family AT5G55130 69.149 0.0 658.0
Fso9g01511 WGDA 17 144 Sulfurtransferasese/Rhodanese gene family AT5G03455 70.769 1.72e-67 201.0
Fso9g01962 . 147 348 Sulfurtransferasese/Rhodanese gene family AT5G23060 30.435 1.28e-19 89.4
Fso10g00186 . 4 438 Sulfurtransferasese/Rhodanese gene family AT1G17850 55.804 6.59e-171 484.0
Fso10g00657 . 70 474 Sulfurtransferasese/Rhodanese gene family AT2G40760 71.852 0.0 597.0
Fso13g00288 . 42 222 Sulfurtransferasese/Rhodanese gene family AT4G27700 79.006 2.51e-108 309.0
Fso14g01429 . 96 179 Sulfurtransferasese/Rhodanese gene family AT5G19370 34.021 2.41e-08 49.7
Fso15g00858 . 33 222 Sulfurtransferasese/Rhodanese gene family AT5G55130 29.592 7.08e-12 65.5
Fso15g01037 . 45 181 Sulfurtransferasese/Rhodanese gene family AT4G35770 62.774 4.38e-59 181.0
Fso17g01556 . 34 384 Sulfurtransferasese/Rhodanese gene family AT5G23060 66.382 1.48e-171 483.0
Fso10001649.1g00003 . 24 149 Sulfurtransferasese/Rhodanese gene family AT2G17850 53.543 3.81e-43 138.0
Fso10001560.1g00003 . 24 149 Sulfurtransferasese/Rhodanese gene family AT2G17850 53.543 2.31e-43 139.0
Fso10000679.1g00002 . 17 144 Sulfurtransferasese/Rhodanese gene family AT5G03455 70.769 1.72e-67 201.0