AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ftr12g02553 ATGAAGGTCTATAAGGAGAATTCGATTCTTTCGTTCAACAACGCTGCTAATCATCCTCTAGATTACATTGAATTTGATGTTCAGGTGACAAAAGACGACACACCAGTGATCTTTCACGACAATTTCATCCTCTCTGAAGAGAATGGTAACATAGTTGAAAAACGAGTCACCGATTTGACTTTGGATGAGTTCTTCAGTTATGGTCCTCAACGCGAAACAGGTCGGGTGGGAAAAACATTGCTGAGAAGATCAAACGGAAAGATTGTCGGGTGGGACGTTGAGATCGATGATCATTCTTGCACCCTTGAAGAAGCATTCCAGAAAGTGAACCCTTGTTTGGGATTTAACATCGAGTTGAAATTTGATGATTACATTGTTTATGAAGAAGAGTATCTCATTCATGTTCTTCAAGTTATCTTAAAGGTGGTGTATGAAAACGCCCAAGAAAGACCTGTACTTTTCTCAAGCTTCCAGCCTGATGTGGCCTTGCTTATGAAGAAACTTCAACATAAATACCCGGTGTACTTCTTGACAAACGGCGGAAATGAGATATTCGATGACGTTCGAATGAACTCGTTAGAAGAAGCGAAGAAGCTGGCCATATCGGGCGGTTTGGACGGAGTTGTTTCGGAAGTAAAGGGTATATTTAGAAACCCTTCAGTAGTAAGAGAGATCAAAGAATCAAATCTCTCCCTCCTTACTTATGGCAAACTAAATAACGTCCCTGAAGCCGTACACGTCCAATATCTTATGGGCGTCGAGGGTGTCATTGTTGATCTAGTACAAGAAATTACAAGCGCAGTTGCAGTTTTAAAAACAGGATTTGAAGGAGAGGAAGGAGGATCACAGGTGAAAGAGAACAGCGGCAAGATCGAACTGCCGTTCTTGCTGAGTTTGATTTCACAAGTGATTCAGCATTGA 921 41.48 MKVYKENSILSFNNAANHPLDYIEFDVQVTKDDTPVIFHDNFILSEENGNIVEKRVTDLTLDEFFSYGPQRETGRVGKTLLRRSNGKIVGWDVEIDDHSCTLEEAFQKVNPCLGFNIELKFDDYIVYEEEYLIHVLQVILKVVYENAQERPVLFSSFQPDVALLMKKLQHKYPVYFLTNGGNEIFDDVRMNSLEEAKKLAISGGLDGVVSEVKGIFRNPSVVREIKESNLSLLTYGKLNNVPEAVHVQYLMGVEGVIVDLVQEITSAVAVLKTGFEGEEGGSQVKENSGKIELPFLLSLISQVIQH 306
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ftr12g02553 306 Pfam Glycerophosphoryl diester phosphodiesterase family 4 261 IPR030395 GO:0006629(InterPro)|GO:0008081(InterPro)
Ftr12g02553 306 ProSiteProfiles GP-PDE domain profile. 1 268 IPR030395 GO:0006629(InterPro)|GO:0008081(InterPro)
Ftr12g02553 306 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 4 269 IPR051578 GO:0046475(PANTHER)
Ftr12g02553 306 Gene3D Phosphatidylinositol (PI) phosphodiesterase 1 269 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
Ftr12g02553 306 SUPERFAMILY PLC-like phosphodiesterases 3 262 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ftr12g02553 K18696 glycerophosphodiester phosphodiesterase [EC:3.1.4.46]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ftr Ftr-Chr12:89024408 Ftr15g02259 Ftr-Chr15:82920553 dispersed