AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ftr12g02555 ATGTCATCTCTCTGTGATTTCTGCAACCAGAGATCCGCAGTGCTGTACTGTAAAGCCGATTCAGCTAAGCTCTGTTTGCTCTGCGACAACGCCGTACACTCCGCTAACGCTCTCTCTCTCAAGCATATCCGGTCTCAGATCTGCGACAACTGCGGTTCGGATGGCGTCTCCGTCGTCTGTTCCACCGAGAACCTCCTCCTCTGCACCGCTTGCGACCACGATTTCCACGGTGACCCCTCCGTTTCCTCCTTCCACAATCGTTATCCCGTCGATGAGATCACCGGTTGCCCTTCTGTTTACGAACTCGCTTCACTTTGGGGGTTTAGTCTCAAGCCTTCGGTTTCCGACGGTAATTCGTGTGAGAATAAGCTTTCTGCTACGGATTTTCGGGGTTTGACGACGGGGCGTGATGAAACTAGTTGTTATGATGAGGTGCCTAGTGTTGAGTGGAAATCGAGAGGTTTGGGGTGTGGAGTGCGTACGAAGGTTATGTATAAGCAGTTGTTGGAGCTTGCGAAGGAACGATTTGATGGAGATGGAGGTGAATTGGGGCCTCAAACTCCGAGTGGATGTGGTCAGAAGGAGATATCAGAAGGTTTTGAGTTTGAGGAGCAAGAGGAGCAGGATTTGTTGAATCAGCAAACTCCTTTGACGTATTTGCTCTTGCCCCCCCAGAATTCGTCGAACTCAAAAGCAAATAATATCACTGAATTTAGTAACATGTGGAGCTATAGCCCTAAACGCCAAACAAGTCAGATATGGGATTTCAGTCTAGGAAGATCAAGGTCCTCTGAGGCAAGATGTGATAATCTTGGTTTTGCAATAAACAACTGTACTGACCTTGTTGAGGATGCTTCTTTCACAACAATGGAAGTGTTAAAAGAAATGGATGCTATAAACATACCTATCACCACCAATCCTTCACAAAATATATCTGGTTGCAGATCAACAATGGAGAGTGACAACAGACAAATTACTGGACCATCATCAGAAGCAAAAATGATGGAATTTAATGGATGTGATTCGATCATGGATGGTCAGATGATAGACGGGCTTTTAATGACTAGTCAAGGATTAGAATTACCAGCAACAACCAAAGTGGATGCTCAGCAGTTTGCGCAGAACAGATGCAATGCAATGTTACGTTACAAGGAGAAGAAGAAAACAAGAAGGTACGACAAGTGCATCCGCTACGAATCACGAAAGGCAAGAGCTGATACTAGAAAACGAGTAAAGGGCCGGTTTGTGAAGACAATCCAATGA 1263 45.68 MSSLCDFCNQRSAVLYCKADSAKLCLLCDNAVHSANALSLKHIRSQICDNCGSDGVSVVCSTENLLLCTACDHDFHGDPSVSSFHNRYPVDEITGCPSVYELASLWGFSLKPSVSDGNSCENKLSATDFRGLTTGRDETSCYDEVPSVEWKSRGLGCGVRTKVMYKQLLELAKERFDGDGGELGPQTPSGCGQKEISEGFEFEEQEEQDLLNQQTPLTYLLLPPQNSSNSKANNITEFSNMWSYSPKRQTSQIWDFSLGRSRSSEARCDNLGFAINNCTDLVEDASFTTMEVLKEMDAINIPITTNPSQNISGCRSTMESDNRQITGPSSEAKMMEFNGCDSIMDGQMIDGLLMTSQGLELPATTKVDAQQFAQNRCNAMLRYKEKKKTRRYDKCIRYESRKARADTRKRVKGRFVKTIQ 420
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ftr12g02555 420 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 417 - -
Ftr12g02555 420 SMART bboxneu5 1 47 IPR000315 GO:0008270(InterPro)
Ftr12g02555 420 Pfam CCT motif 376 417 IPR010402 GO:0005515(InterPro)
Ftr12g02555 420 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Ftr12g02555 420 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270(InterPro)
Ftr12g02555 420 ProSiteProfiles CCT domain profile. 376 418 IPR010402 GO:0005515(InterPro)
Ftr12g02555 420 CDD Bbox1-BBX-like 4 47 IPR049808 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ftr12g02555 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ftr Ftr-Chr12:89084676 Ftr1g02386 Ftr-Chr1:84581176 dispersed
Ftr Ftr-Chr12:89084676 Ftr13g02403 Ftr-Chr13:77260617 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Ftr1g00138 WGDA 7 328 C2C2-CO-like Transcription Factor family AT2G47890 44.415 6.82e-93 280.0
Ftr3g00587 . 235 339 C2C2-CO-like Transcription Factor family AT5G15850 37.273 2.28e-13 66.6
Ftr3g00644 . 1 331 C2C2-CO-like Transcription Factor family AT1G75540 44.606 1.70e-80 245.0
Ftr3g02488 . 176 276 C2C2-CO-like Transcription Factor family AT2G24790 37.624 5.62e-11 60.8
Ftr4g03715 . 1 110 C2C2-CO-like Transcription Factor family AT5G48250 72.727 2.62e-53 169.0
Ftr4g03716 ACH 180 372 C2C2-CO-like Transcription Factor family AT3G07650 56.075 1.61e-69 216.0
Ftr4g03834 ACH 1 204 C2C2-CO-like Transcription Factor family AT1G75540 52.582 3.61e-63 196.0
Ftr5g02248 . 185 270 C2C2-CO-like Transcription Factor family AT2G24790 40.698 1.46e-12 61.2
Ftr5g02610 WGDA 152 328 C2C2-CO-like Transcription Factor family AT2G47890 38.889 4.01e-30 111.0
Ftr5g02611 WGDA 8 135 C2C2-CO-like Transcription Factor family AT2G47890 50.331 4.02e-48 156.0
Ftr7g02087 . 289 400 C2C2-CO-like Transcription Factor family AT1G68520 42.553 4.74e-20 85.1
Ftr7g02823 . 3 104 C2C2-CO-like Transcription Factor family AT5G54470 49.55 4.29e-31 109.0
Ftr8g00610 . 45 406 C2C2-CO-like Transcription Factor family AT5G24930 46.819 3.61e-93 283.0
Ftr8g00820 . 3 165 C2C2-CO-like Transcription Factor family AT4G27310 39.205 4.49e-32 114.0
Ftr8g00899 ACH 1 299 C2C2-CO-like Transcription Factor family AT1G78600 52.716 3.41e-97 286.0
Ftr9g01790 ACH,WGDA 1 372 C2C2-CO-like Transcription Factor family AT3G07650 53.806 5.49e-132 380.0
Ftr9g01855 ACH 1 198 C2C2-CO-like Transcription Factor family AT1G75540 48.485 5.23e-55 177.0
Ftr10g00824 . 2 87 C2C2-CO-like Transcription Factor family AT5G15850 71.264 2.18e-40 134.0
Ftr11g01329 . 1 183 C2C2-CO-like Transcription Factor family AT4G38960 57.674 2.90e-79 233.0
Ftr11g02198 . 4 104 C2C2-CO-like Transcription Factor family AT5G54470 49.02 1.00e-26 99.8
Ftr12g02555 . 12 398 C2C2-CO-like Transcription Factor family AT2G33500 38.979 1.74e-78 246.0
Ftr12g02617 . 5 401 C2C2-CO-like Transcription Factor family AT1G68520 41.284 4.76e-86 266.0
Ftr12g03124 . 9 347 C2C2-CO-like Transcription Factor family AT3G02380 47.57 6.50e-114 335.0
Ftr13g00291 . 8 355 C2C2-CO-like Transcription Factor family AT5G57660 46.494 1.24e-99 298.0
Ftr13g00315 WGDA 289 401 C2C2-CO-like Transcription Factor family AT1G68520 41.228 1.91e-19 80.5
Ftr13g00618 WGDA 1 150 C2C2-CO-like Transcription Factor family AT5G48250 64.516 1.72e-61 193.0
Ftr14g00843 . 1 373 C2C2-CO-like Transcription Factor family AT5G48250 55.668 4.07e-140 402.0
Ftr15g00153 . 1 200 C2C2-CO-like Transcription Factor family AT4G39070 51.707 9.89e-61 187.0
Ftr17g00600 . 257 347 C2C2-CO-like Transcription Factor family AT5G15840 39.56 2.13e-13 63.9
Ftr18g00500 . 269 329 C2C2-CO-like Transcription Factor family AT5G57660 44.262 2.24e-11 62.8
Ftr18g02134 . 237 332 C2C2-CO-like Transcription Factor family AT5G15850 36.634 5.75e-11 56.6
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Ftr CCT 3.6e-15 CL0281 TF C2C2-CO-like