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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ftr12g02558 ATGGAGAGAAACGAGGCCTGTGGCTTGACGGCATTTGGTGCTTTCGAAATGGGAATCGGAATGGATAACGCTTTCAATTCCAATGCCAATGCCAATGCTAATGCCAATAAAGCTTCTGCCGCCGTTGATAGGGATCTCGTCGCTGCTGCTCGATTTGATTTCTTGAAGAAGAAACGGATGCCCAGATTCCGGCGAGGTGCCTCCGCCGCCCTCCGGTCGTTTCGTCCCTTCACCTCCTTCAATGCTCCTCTACCTGCCAGTATTGTTGATCAGGGAAGGCTGACATTTCTGTTCAGCAAGAAGCTGCAAAAAAGTGATGTAGGTGTGCTAAAAAGAATTGTGCTGCCAAAGAAACCAGCAGAAACACACCTACCTGCTCTGATTGCGAAGGAAGGTATCGTTTTGGAGATGGATGACATGGATGGCATGAATGTGTGGTGTTTCAAGTTTAGGTTCTGGCCAAACAATAACAGTCGCATGTATGTCCTCGAGGGCACTGGGGATTTTGCCGAGGAGCATGAGCTGCAACTTGGTGACTATATAATGTTGTATCGGGATTCAGTGAATCTTAACTATGTGATACAAGCTGTAAAAGCATATGAAGTTGAGGAATACGCAAAGAAAGAAGTGAAATCAAACATTGGTACTCAGGGAAAATCTGTCAAAGCACCACCAAATACTGGTAGTTTAATGAACCAAAACTGCTCATGGGGCGGTCTTGAGGTTGAGCTATTGAACCCAATTAACTACCCTATGAATACTTCGACTGTCGAGGAGCAGATGGATATGACCTTCATATATGATACCAGCTACTCCAACGACACTATGTCTCCACTTGATTTCTTGGGTGGATTCATGACAAGCTACCCGGCTCAGCCAAACTTTGCGATCGAGAATTTGTCGATTGATGATCTGTACAAGATCTAG 927 45.52 MERNEACGLTAFGAFEMGIGMDNAFNSNANANANANKASAAVDRDLVAAARFDFLKKKRMPRFRRGASAALRSFRPFTSFNAPLPASIVDQGRLTFLFSKKLQKSDVGVLKRIVLPKKPAETHLPALIAKEGIVLEMDDMDGMNVWCFKFRFWPNNNSRMYVLEGTGDFAEEHELQLGDYIMLYRDSVNLNYVIQAVKAYEVEEYAKKEVKSNIGTQGKSVKAPPNTGSLMNQNCSWGGLEVELLNPINYPMNTSTVEEQMDMTFIYDTSYSNDTMSPLDFLGGFMTSYPAQPNFAIENLSIDDLYKI 308
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ftr12g02558 308 SUPERFAMILY DNA-binding pseudobarrel domain 96 195 IPR015300 -
Ftr12g02558 308 ProSiteProfiles B3 DNA-binding domain profile. 98 200 IPR003340 GO:0003677(InterPro)
Ftr12g02558 308 SMART B3-2 98 200 IPR003340 GO:0003677(InterPro)
Ftr12g02558 308 Gene3D - 94 213 IPR015300 -
Ftr12g02558 308 CDD B3-DNA 96 195 IPR003340 GO:0003677(InterPro)
Ftr12g02558 308 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 58 199 IPR044800 GO:0003700(InterPro)
Ftr12g02558 308 Pfam B3 DNA binding domain 98 195 IPR003340 GO:0003677(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ftr12g02558 K09287 RAV-like factor
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ftr Ftr-Chr12:89115868 Ftr1g00289 Ftr-Chr1:5771685 dispersed
Ftr Ftr-Chr12:89115868 Ftr5g02349 Ftr-Chr5:96325679 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Ftr1g00289 . 64 713 B3 DNA Binding Superfamily AT3G24650 39.39 7.67e-124 384.0
Ftr1g00423 . 4 222 B3 DNA Binding Superfamily AT5G58280 50.661 6.00e-69 214.0
Ftr1g01812 WGDA 1 855 B3 DNA Binding Superfamily AT5G62000 58.362 0.0 938.0
Ftr1g02100 . 55 394 B3 DNA Binding Superfamily AT5G62000 44.638 2.19e-94 300.0
Ftr2g00291 ACH 9 697 B3 DNA Binding Superfamily AT2G30470 48.876 0.0 603.0
Ftr3g00279 . 246 389 B3 DNA Binding Superfamily AT4G32010 40.0 6.07e-32 123.0
Ftr3g02360 ACH 7 583 B3 DNA Binding Superfamily AT2G46530 60.229 0.0 685.0
Ftr3g02819 WGDA 1 669 B3 DNA Binding Superfamily AT4G30080 54.755 0.0 681.0
Ftr3g03007 . 12 339 B3 DNA Binding Superfamily AT4G30080 64.759 1.25e-145 425.0
Ftr4g00476 WGDA 598 928 B3 DNA Binding Superfamily AT1G30330 54.142 1.44e-91 294.0
Ftr4g00550 . 51 110 B3 DNA Binding Superfamily AT2G33860 63.077 5.50e-22 87.0
Ftr4g00551 . 123 485 B3 DNA Binding Superfamily AT2G33860 56.284 3.67e-133 396.0
Ftr4g03865 . 71 199 B3 DNA Binding Superfamily AT5G42700 40.31 1.97e-27 105.0
Ftr5g00118 . 1 458 B3 DNA Binding Superfamily AT5G62000 73.913 0.0 702.0
Ftr5g00119 WGDA 634 848 B3 DNA Binding Superfamily AT5G62000 47.556 1.74e-57 194.0
Ftr5g00410 . 1 228 B3 DNA Binding Superfamily AT3G19184 53.556 1.87e-72 220.0
Ftr5g02349 ACH 1 583 B3 DNA Binding Superfamily AT4G32010 48.089 0.0 535.0
Ftr5g02722 . 5 751 B3 DNA Binding Superfamily AT4G32010 50.82 0.0 711.0
Ftr7g01256 . 646 794 B3 DNA Binding Superfamily AT5G37020 63.087 2.10e-53 179.0
Ftr7g01834 . 115 222 B3 DNA Binding Superfamily AT3G19184 50.0 1.90e-28 112.0
Ftr7g01855 . 30 124 B3 DNA Binding Superfamily AT3G18960 29.703 3.09e-09 51.6
Ftr7g02314 . 320 610 B3 DNA Binding Superfamily AT4G23980 43.284 6.87e-64 213.0
Ftr8g03162 . 1018 1165 B3 DNA Binding Superfamily AT5G20730 73.026 6.55e-68 221.0
Ftr9g01686 . 8 221 B3 DNA Binding Superfamily AT3G19184 63.134 3.50e-86 255.0
Ftr9g01688 . 68 199 B3 DNA Binding Superfamily AT5G42700 42.424 5.37e-30 108.0
Ftr10g00375 . 1 666 B3 DNA Binding Superfamily AT4G30080 57.06 0.0 700.0
Ftr10g00598 WGDA 660 772 B3 DNA Binding Superfamily AT5G60450 58.475 2.46e-43 149.0
Ftr10g00599 . 62 536 B3 DNA Binding Superfamily AT5G60450 60.976 0.0 567.0
Ftr10g01126 . 417 796 B3 DNA Binding Superfamily AT5G37020 47.549 7.96e-85 274.0
Ftr11g00104 . 111 225 B3 DNA Binding Superfamily AT4G00260 30.508 1.68e-09 53.5
Ftr11g00106 . 10 321 B3 DNA Binding Superfamily AT5G66980 22.884 3.11e-14 70.1
Ftr11g00107 . 6 244 B3 DNA Binding Superfamily AT4G00260 26.953 1.01e-16 78.6
Ftr11g00236 . 167 289 B3 DNA Binding Superfamily AT1G05930 29.771 7.99e-08 50.8
Ftr12g00046 . 32 459 B3 DNA Binding Superfamily AT1G19850 74.478 0.0 662.0
Ftr12g01915 WGDA 598 928 B3 DNA Binding Superfamily AT1G30330 55.587 4.14e-100 320.0
Ftr12g01916 . 235 285 B3 DNA Binding Superfamily AT1G30330 86.275 1.00e-17 73.9
Ftr12g01917 . 1 219 B3 DNA Binding Superfamily AT1G30330 87.215 2.53e-139 411.0
Ftr12g02558 . 45 313 B3 DNA Binding Superfamily AT3G26790 41.869 3.34e-58 187.0
Ftr13g00338 . 738 1068 B3 DNA Binding Superfamily AT1G19220 40.162 4.30e-62 213.0
Ftr13g00339 . 10 488 B3 DNA Binding Superfamily AT1G19220 67.004 0.0 639.0
Ftr13g01940 . 1 572 B3 DNA Binding Superfamily AT4G30080 52.174 0.0 554.0
Ftr15g02642 ACH 489 616 B3 DNA Binding Superfamily AT4G23980 67.188 1.61e-53 179.0
Ftr15g02643 . 15 359 B3 DNA Binding Superfamily AT2G46530 72.989 0.0 526.0
Ftr16g01252 . 1 539 B3 DNA Binding Superfamily AT4G30080 52.793 0.0 533.0
Ftr17g00284 . 271 398 B3 DNA Binding Superfamily AT2G30470 48.062 2.50e-35 132.0
Ftr17g00319 . 1 844 B3 DNA Binding Superfamily AT5G62000 57.109 0.0 906.0
Ftr17g01639 . 12 534 B3 DNA Binding Superfamily AT4G30080 56.115 0.0 563.0
Ftr17g01640 WGDA 591 659 B3 DNA Binding Superfamily AT4G30080 59.42 3.74e-22 86.3
Ftr18g00166 . 33 294 B3 DNA Binding Superfamily AT1G19850 82.264 7.63e-151 444.0
Ftr18g01613 WGDA 641 772 B3 DNA Binding Superfamily AT5G60450 55.474 8.19e-45 157.0
Ftr10000834.1g00001 . 54 199 B3 DNA Binding Superfamily AT2G33860 67.114 9.13e-59 191.0
Ftr10000834.1g00002 . 233 483 B3 DNA Binding Superfamily AT2G33860 44.615 5.29e-59 196.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Ftr B3 5.8e-13 CL0405 TF B3