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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ftr2g00477 ATGTTCTTCAATACACGATTCACCATGTCCACCACCTGTGAAGGAAAAAGTTCATGGCCCGAGCTTGTAGGTGTGAGAGGAGATGCAGCGGCTAGTACAATTGAGAGAGAGAATACAAGGGTCGATGCAATTGTGGTTGTGGACGGAAGGGATATTGTTACAGGTGAGTTTCGATGCGACCGTGTGTGGGTGTGGGTGAACTCTAATGGGGTGGTCATTCGAACTCCATTTATTGGCTAA 240 47.5 MFFNTRFTMSTTCEGKSSWPELVGVRGDAAASTIERENTRVDAIVVVDGRDIVTGEFRCDRVWVWVNSNGVVIRTPFIG 79
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ftr2g00477 79 PANTHER PROTEIN, PUTATIVE, EXPRESSED-RELATED 13 79 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Ftr2g00477 79 Pfam Potato inhibitor I family 16 79 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Ftr2g00477 79 Gene3D Trypsin Inhibitor V, subunit A 9 78 - -
Ftr2g00477 79 ProSitePatterns Potato inhibitor I family signature. 19 30 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Ftr2g00477 79 SUPERFAMILY CI-2 family of serine protease inhibitors 12 79 IPR036354 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ftr2g00477 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ftr Ftr-Chr2:7560057 Ftr2g00480 Ftr-Chr2:7603773 dispersed
Ftr Ftr-Chr2:7491712 Ftr2g00477 Ftr-Chr2:7560057 proximal