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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ftr2g00482 ATGGCAACAGGCTGCAAAGGAAAGAGTTCATGGCCGGAGCTTGTTGGGGCAACCGGAGAAGTTGCGGCTGCTACGATTGAGGAAGAGAATCCACACGTCAATGCTATTGTCGTATTAGATGGAACTCCCGTCACTGCGGACTTCCGGTGTGACCGTGTGCGGGTGTGGGTGAACTCTAAGGGAGTGGTCATTCGAACGCCTATCATTACGTGA 213 53.05 MATGCKGKSSWPELVGATGEVAAATIEEENPHVNAIVVLDGTPVTADFRCDRVRVWVNSKGVVIRTPIIT 70
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ftr2g00482 70 ProSitePatterns Potato inhibitor I family signature. 11 22 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Ftr2g00482 70 PANTHER PROTEIN, PUTATIVE, EXPRESSED-RELATED 4 69 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Ftr2g00482 70 SUPERFAMILY CI-2 family of serine protease inhibitors 4 69 IPR036354 -
Ftr2g00482 70 Pfam Potato inhibitor I family 8 69 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Ftr2g00482 70 Gene3D Trypsin Inhibitor V, subunit A 2 70 - -
Ftr2g00482 70 PRINTS Potato inhibitor I signature 10 23 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Ftr2g00482 70 PRINTS Potato inhibitor I signature 35 46 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Ftr2g00482 70 PRINTS Potato inhibitor I signature 47 57 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ftr2g00482 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ftr Ftr-Chr14:2401721 Ftr2g00482 Ftr-Chr2:7647994 dispersed
Ftr Ftr-Chr14:2407174 Ftr2g00482 Ftr-Chr2:7647994 dispersed
Ftr Ftr-Chr14:2413817 Ftr2g00482 Ftr-Chr2:7647994 dispersed
Ftr Ftr-Chr2:7603773 Ftr2g00482 Ftr-Chr2:7647994 dispersed
Ftr Ftr-Chr2:7633394 Ftr2g00482 Ftr-Chr2:7647994 tandem
Ftr Ftr-Chr2:7647994 Ftr2g00483 Ftr-Chr2:7665136 tandem