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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ftr2g00495 ATGGCATCCATCTCAGCTTCCATCTCCACCACCTCACCATCATTCTCTCTGCTCCAAAAGCCCACAATCACCGCCCACGGTTCTCCGGTTATCGGGTTGCCATCAATGAGCAAGATGGGGAGAGTGAGATGTTCAATGGACAATAATAAGCCCGTTGTGACATCCAACGACGGTGCACGCATGACTGCACCGTCGTTGATGGCTGCAGCAGTGGCTGCAGTCATGTCGAGCCCGGCAGCCCAGGCTCTGGTGGACGAGAGAATGAGCACCGAAGGGACCGGGCTACCGTTCGGGCTAAGCAACAACCTTCTTGGGTGGATTCTTTTTGGGGTTTTTGGTTTGATTTGGACACTTTACTTTGTGTACGTTGGTGGCCTTGATGAGGATGAGGAGTCAGGATTATCGCTTTAA 411 52.55 MASISASISTTSPSFSLLQKPTITAHGSPVIGLPSMSKMGRVRCSMDNNKPVVTSNDGARMTAPSLMAAAVAAVMSSPAAQALVDERMSTEGTGLPFGLSNNLLGWILFGVFGLIWTLYFVYVGGLDEDEESGLSL 136
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ftr2g00495 136 Pfam Photosystem II reaction centre W protein (PsbW) 1 136 IPR009806 GO:0009507(InterPro)|GO:0009523(InterPro)|GO:0015979(InterPro)
Ftr2g00495 136 PANTHER PHOTOSYSTEM II REACTION CENTER W PROTEIN, CHLOROPLASTIC 1 136 IPR009806 GO:0009507(InterPro)|GO:0009523(InterPro)|GO:0009535(PANTHER)|GO:0015979(InterPro)|GO:0042549(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ftr2g00495 K02721 photosystem II PsbW protein
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Event-related genes

Select Gene_1 Gene_2 Event_name
97847 Ftr2g00495 Ftr5g02522
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ftr Ftr-Chr2:8006745 Ftr2g00496 Ftr-Chr2:8010448 tandem
Ftr Ftr-Chr2:8006745 Ftr5g02522 Ftr-Chr5:98557888 wgd