AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ftr2g00498 | ATGGACCAAAACACCACCACTTTGGATCTTTTTAAGGATATCGATCTCGCAACCGAGCTCCGGTTAGGGTTACCGGGATCCGATGACCAATCGGAGATGAAAAGCAGCCTTTCCGGCAACAAAAGAAGCTCATCGGAGATGGGATCAACCGCCTCCACCGATGAAAATCAATCAAGATTCTCACCACCCACCAAGGAACAAGTAGTCGGGTGGCCGCCGGTGAGATCATACCGAAAAAACAAGATTCAAGCGAAGAAAACGGAGTCGGAAATCGGATCGGGGATGTATGTGAAAGTAAGCATGGATGGAGCTCCATATTTGAGGAAATTAGACCTTAAAATGTACAAAAGTTATGAAGAGCTCATCAAGGGTTTGCAAGAGATGTTCAAGTGCATCATTGGGTTGTACTCTGAGAGAGAAGGGTACAATGGATCACAGCATGTTCCTACTTATGAAGATAAAGATGGAGATTGGATGCTTGTTGAGATGTACCATGGGAGATGTTTATAA | 510 | 44.71 | MDQNTTTLDLFKDIDLATELRLGLPGSDDQSEMKSSLSGNKRSSSEMGSTASTDENQSRFSPPTKEQVVGWPPVRSYRKNKIQAKKTESEIGSGMYVKVSMDGAPYLRKLDLKMYKSYEELIKGLQEMFKCIIGLYSEREGYNGSQHVPTYEDKDGDWMLVEMYHGRCL | 169 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ftr2g00498 | 169 | Pfam | AUX-IAA family | 17 | 161 | IPR033389 | - | |
| Ftr2g00498 | 169 | ProSiteProfiles | PB1 domain profile. | 94 | 169 | IPR053793 | - | |
| Ftr2g00498 | 169 | SUPERFAMILY | CAD & PB1 domains | 87 | 161 | - | - | |
| Ftr2g00498 | 169 | MobiDBLite | consensus disorder prediction | 29 | 64 | - | - | |
| Ftr2g00498 | 169 | Gene3D | - | 89 | 164 | - | - | |
| Ftr2g00498 | 169 | MobiDBLite | consensus disorder prediction | 23 | 72 | - | - | |
| Ftr2g00498 | 169 | PANTHER | AUXIN-RESPONSIVE PROTEIN IAA17 | 17 | 162 | IPR003311 | GO:0005634(InterPro)|GO:0006355(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ftr2g00498 | K14484 | auxin-responsive protein IAA |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 97848 | Ftr2g00498 | Ftr4g00735 | |
| 97849 | Ftr2g00498 | Ftr5g02527 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Ftr | Ftr-Chr12:86985238 | Ftr2g00498 | Ftr-Chr2:8028739 | dispersed | |
| Ftr | Ftr-Chr2:8028739 | Ftr8g03080 | Ftr-Chr8:104360481 | dispersed | |
| Ftr | Ftr-Chr1:3898254 | Ftr2g00498 | Ftr-Chr2:8028739 | wgd | |
| Ftr | Ftr-Chr2:8028739 | Ftr4g00735 | Ftr-Chr4:8350103 | wgd | |
| Ftr | Ftr-Chr2:8028739 | Ftr5g02527 | Ftr-Chr5:98617664 | wgd |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Ftr1g00210 | . | 125 | 236 | IAA gene family | AT3G04730 | 76.984 | 3.05e-67 | 201.0 | |
| Ftr1g00275 | ACH,WGDA | 44 | 246 | IAA gene family | AT2G33310 | 49.123 | 2.17e-58 | 186.0 | |
| Ftr1g01921 | ACH | 2 | 222 | IAA gene family | AT3G04730 | 45.701 | 9.14e-57 | 177.0 | |
| Ftr2g00498 | ACH | 14 | 156 | IAA gene family | AT3G23030 | 54.375 | 5.83e-48 | 152.0 | |
| Ftr2g02838 | . | 62 | 246 | IAA gene family | AT2G33310 | 52.821 | 9.87e-64 | 197.0 | |
| Ftr3g01796 | . | 52 | 189 | IAA gene family | AT4G14550 | 29.167 | 1.34e-12 | 62.0 | |
| Ftr3g02271 | . | 37 | 252 | IAA gene family | AT1G51950 | 46.606 | 1.10e-55 | 176.0 | |
| Ftr4g00735 | ACH,WGDA | 8 | 137 | IAA gene family | AT3G23030 | 52.349 | 5.19e-37 | 124.0 | |
| Ftr4g00785 | ACH,WGDA | 54 | 223 | IAA gene family | AT2G33310 | 47.953 | 3.99e-40 | 137.0 | |
| Ftr4g01966 | . | 1 | 152 | IAA gene family | AT4G14550 | 46.341 | 1.29e-32 | 114.0 | |
| Ftr5g02464 | ACH,WGDA | 44 | 241 | IAA gene family | AT2G33310 | 49.115 | 3.19e-57 | 183.0 | |
| Ftr5g02527 | ACH,WGDA | 9 | 163 | IAA gene family | AT3G23030 | 56.14 | 2.95e-57 | 176.0 | |
| Ftr6g02257 | . | 45 | 226 | IAA gene family | AT2G33310 | 44.565 | 8.27e-39 | 134.0 | |
| Ftr7g01724 | ACH,WGDA | 65 | 236 | IAA gene family | AT3G04730 | 61.494 | 1.03e-66 | 208.0 | |
| Ftr8g03080 | WGDA | 3 | 195 | IAA gene family | AT4G14550 | 47.321 | 2.59e-50 | 162.0 | |
| Ftr9g01972 | . | 10 | 137 | IAA gene family | AT3G23030 | 38.298 | 4.80e-21 | 83.2 | |
| Ftr12g02417 | . | 16 | 170 | IAA gene family | AT3G23030 | 55.978 | 2.60e-62 | 189.0 | |
| Ftr12g03291 | ACH | 1 | 228 | IAA gene family | AT4G14550 | 49.814 | 4.92e-75 | 229.0 | |
| Ftr12g03993 | WGDA | 7 | 225 | IAA gene family | AT1G04250 | 47.489 | 7.19e-59 | 184.0 | |
| Ftr12g03994 | ACH,WGDA | 9 | 161 | IAA gene family | AT3G23030 | 46.835 | 6.85e-35 | 118.0 | |
| Ftr12g04046 | ACH,WGDA | 3 | 266 | IAA gene family | AT1G51950 | 55.439 | 1.70e-87 | 259.0 | |
| Ftr13g00472 | ACH | 1 | 235 | IAA gene family | AT3G04730 | 49.434 | 2.39e-72 | 221.0 | |
| Ftr13g00488 | . | 1 | 223 | IAA gene family | AT4G14550 | 44.643 | 2.93e-54 | 171.0 | |
| Ftr14g01974 | ACH,WGDA | 1 | 225 | IAA gene family | AT4G14550 | 50.584 | 6.94e-72 | 219.0 | |
| Ftr15g01562 | . | 1 | 228 | IAA gene family | AT4G14550 | 48.062 | 2.60e-71 | 218.0 | |
| Ftr16g00091 | WGDA | 1 | 266 | IAA gene family | AT1G51950 | 50.883 | 1.38e-80 | 241.0 | |
| Ftr16g00148 | WGDA | 9 | 167 | IAA gene family | AT3G23030 | 46.626 | 1.63e-35 | 120.0 | |
| Ftr16g00149 | WGDA | 2 | 222 | IAA gene family | AT3G04730 | 43.304 | 9.35e-51 | 162.0 | |
| Ftr10001040.1g00009 | . | 1 | 111 | IAA gene family | AT4G14550 | 53.982 | 6.16e-30 | 105.0 | |
| Ftr10001040.1g00010 | . | 150 | 228 | IAA gene family | AT4G14550 | 89.873 | 2.53e-49 | 153.0 |
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| Ftr | AUX_IAA | 5.7e-36 | CL0072 | TR | AUX/IAA |