AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ftr2g00501 ATGAATATGACCACCATCATTTCCCCCAAATCATCCTCCTTTCTTCTTCACCTTCAAAACACCACCAACAAGCCACCACACTCACTCTTTCGTCTCCAAGCTCCCACCTTTCTTCCATTTTCTCTCAAATCAACCTTCAGTCCTCCAATGGCAACTCTCTCTGTAGCTTCACCCACCCTAGGACTCTCTCAGACCTTCACCAAACTCAAACAAGATGGGAAAGTAGCATTCATACCATATATCACAGCTGGTGACCCTGATCTATCAACAACAGCAGAAGCATTGAAGGTGCTCGACACTTGTGGATCAGATATAATTGAATTGGGTGTTCCATATTCGGATCCATTGGCTGATGGACCAGTCATCCAGGCTGCAGCTACGCGTGCATTATCAAGAGGGACAAATCTTGACGCAATTCTTAATATGTTGAAAGAGGTGATACCACAACTGTCATGTCCAATTGCTTTGTTCACTTATTACAACCCAATTCTTAAGCGTGGAGTGGAGAAGTTCATGGTTACTGTGAAAGAAGTTGGAGTACATGGACTTGTGGTGCCAGATGTCCCTTTGGAGGAAACTGAGCTCTTAAGACAGGAAGCTTCCAAGCATAACATCGAATTGGTACTATTAACAACACCCACTACTCCAAGAGAACGAATGAAAGCAATCGTTGAAGCTACAGAGGGTTTTCTGTACCTTGTGAGTTCTATTGGAGTGACGGGGGCTCGTGCTTCAGTAAGCGAAAAAGTTCAATCTCTCCTACAGGAAATCAAAGCGGAATCAAGTAAGCCTGTAGCTGTTGGCTTTGGCATTTCAAAACCTGAGCATGTGAAACAGGTGGCTGGATGGGGAGCTGATGGTGTGATTGTGGGCAGTGCAGTGGTCAAAATATTAGGTGAAGCAGGGTCCCCAGAAGAAGGCCTGAAAAAACTAGAAGAATTCACAAAATCTTTAAAATCTGCATTGATTTGA 972 44.14 MNMTTIISPKSSSFLLHLQNTTNKPPHSLFRLQAPTFLPFSLKSTFSPPMATLSVASPTLGLSQTFTKLKQDGKVAFIPYITAGDPDLSTTAEALKVLDTCGSDIIELGVPYSDPLADGPVIQAAATRALSRGTNLDAILNMLKEVIPQLSCPIALFTYYNPILKRGVEKFMVTVKEVGVHGLVVPDVPLEETELLRQEASKHNIELVLLTTPTTPRERMKAIVEATEGFLYLVSSIGVTGARASVSEKVQSLLQEIKAESSKPVAVGFGISKPEHVKQVAGWGADGVIVGSAVVKILGEAGSPEEGLKKLEEFTKSLKSALI 323
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ftr2g00501 323 PANTHER TRYPTOPHAN SYNTHASE, ALPHA CHAIN 56 322 IPR002028 GO:0000162(PANTHER)|GO:0004834(PANTHER)|GO:0004834(InterPro)|GO:0005829(PANTHER)|GO:0006568(InterPro)|GO:0009507(PANTHER)
Ftr2g00501 323 CDD Tryptophan-synthase-alpha 76 319 IPR002028 GO:0004834(InterPro)|GO:0006568(InterPro)
Ftr2g00501 323 Gene3D Aldolase class I 61 323 IPR013785 -
Ftr2g00501 323 NCBIfam tryptophan synthase subunit alpha 66 319 IPR002028 GO:0004834(InterPro)|GO:0006568(InterPro)
Ftr2g00501 323 FunFam Tryptophan synthase alpha chain, chloroplastic 60 323 - -
Ftr2g00501 323 Pfam Tryptophan synthase alpha chain 66 321 IPR002028 GO:0004834(InterPro)|GO:0006568(InterPro)
Ftr2g00501 323 Hamap Tryptophan synthase alpha chain [trpA]. 72 321 IPR002028 GO:0004834(InterPro)|GO:0006568(InterPro)
Ftr2g00501 323 ProSitePatterns Tryptophan synthase alpha chain signature. 106 119 IPR018204 GO:0004834(InterPro)
Ftr2g00501 323 SUPERFAMILY Ribulose-phoshate binding barrel 62 304 IPR011060 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ftr2g00501 K01695 tryptophan synthase alpha chain [EC:4.2.1.20]