AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ftr2g00568 ATGGATATCCTGAAGCAAGAGCTTCTAAAGAAGAGGCAAAGCCTCTCCGAAGAAACCGGAGGACGAAAGGTCTTCAAACGTTCAGAAATCGAACAAAAACGGATCCAAAAGCTTCGCGAAGAAGAAAAACGAGACGCCGAAGCCAAACGCCTCCGTCAAAACCAAAACCAAAGCGAATCGAATTCATCCGATCTCAATCCTTCATCAAACCCTAACTTCAAGCTCGATTCAACGAAGTCAAAACCTGAATCCGGCACCGGTTCATCGTCAAAAGCGGTGATAAGCGACGAACAGAAGATAGACTCGCTGAATTTGCCGAAACAGGAGGTGATCCGCCGGCTGAGGTTTTTGAAGCAGCCGGTGACGTTGTTTGGGGAGAGTGATGACGACCGGTTGGACCGGTTGAAGTATGTGCTGAAGGCGGGGTTGTTTGAGCTTGATGATAGTGATATGACGGAGGGGCAGACGAATGATTTTCTGAGGGATATTGTTGAGTTGAAGAAGAGGCAGAAGTCTGGTATTGTGAGTGATCGGAAACGGAGGGCGACGGAGGAGGCGTCGGAGGATAAGGATGGGGGAGGGGGTGAGGATGATGTTAGTGGTGATGGTGGTTCGTCGGGGATGGATCAGGATAAGGATTTTAAGAGGATGAAGGCGAATTTTGGGGAGCTTTGTGATGAGGATAAGATTCTTGTGTTTTTTAAGAAGTTGTTAATTGAGTGGAACCAGGAGTTGGATGAGATGAGTGAGGTGGAGAAGAGGACGGCGAAGGGGAAGTCGACGTTCGCGACGTTTAAGCAGTGTGCAAGGTACTTGAATCCTTTGTTCAAGTTCTGCAGGAAGAAGGTTCTGCCTGATGACATTAGGCAAGCATTAATGCTAGTGGTGGACTGCTGCATGAAGCGGGATTACTTAGCTGCAATGGATCATTACATCAGAATGGCAATCGGGAACGCACCTTGGCCAATTGGTGTTACTATGGTTGGTATACACGAACGTTCAGCCCGTGAAAAAATTTACACGAACAGTGTGGCCCACGTGATGAACGATGAAACAACTCGAAAATACCTGCAATCAGTTAAAAGACTAATGACATTTTGTCAAAGGAGGTATCCAACAATGCCGTCGAAGGCGGTGGAGTTTAACAGTTTAGCAAATGGTAGTGATTTACAGGCGTTATTGGCAGAAGAAAGGAGGAATGCAGGTGGAAATCAACAGCAGCAGCAAGAAGATAAGCTTTATTTGATGCCAGCCCCAAAGGATGGTTAG 1269 46.97 MDILKQELLKKRQSLSEETGGRKVFKRSEIEQKRIQKLREEEKRDAEAKRLRQNQNQSESNSSDLNPSSNPNFKLDSTKSKPESGTGSSSKAVISDEQKIDSLNLPKQEVIRRLRFLKQPVTLFGESDDDRLDRLKYVLKAGLFELDDSDMTEGQTNDFLRDIVELKKRQKSGIVSDRKRRATEEASEDKDGGGGEDDVSGDGGSSGMDQDKDFKRMKANFGELCDEDKILVFFKKLLIEWNQELDEMSEVEKRTAKGKSTFATFKQCARYLNPLFKFCRKKVLPDDIRQALMLVVDCCMKRDYLAAMDHYIRMAIGNAPWPIGVTMVGIHERSAREKIYTNSVAHVMNDETTRKYLQSVKRLMTFCQRRYPTMPSKAVEFNSLANGSDLQALLAEERRNAGGNQQQQQEDKLYLMPAPKDG 422
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ftr2g00568 422 MobiDBLite consensus disorder prediction 28 94 - -
Ftr2g00568 422 MobiDBLite consensus disorder prediction 174 209 - -
Ftr2g00568 422 MobiDBLite consensus disorder prediction 28 52 - -
Ftr2g00568 422 SMART pr04-2 105 157 IPR014906 -
Ftr2g00568 422 SUPERFAMILY PRP4-like 97 140 IPR036285 -
Ftr2g00568 422 FunFam Pre-mRNA-splicing factor 18 204 375 - -
Ftr2g00568 422 Pfam Prp18 domain 232 373 IPR004098 GO:0005681(InterPro)|GO:0008380(InterPro)
Ftr2g00568 422 SUPERFAMILY Functional domain of the splicing factor Prp18 208 373 - -
Ftr2g00568 422 Gene3D Functional domain of the splicing factor Prp18 206 375 - -
Ftr2g00568 422 Gene3D - 79 158 IPR036285 -
Ftr2g00568 422 FunFam Pre-mRNA-splicing factor 18 78 155 - -
Ftr2g00568 422 MobiDBLite consensus disorder prediction 397 422 - -
Ftr2g00568 422 MobiDBLite consensus disorder prediction 53 94 - -
Ftr2g00568 422 PANTHER PRE-MRNA SPLICING FACTOR-RELATED 1 384 IPR039979 GO:0000350(PANTHER)|GO:0005682(PANTHER)|GO:0008380(InterPro)|GO:0046540(PANTHER)|GO:0071021(PANTHER)
Ftr2g00568 422 Pfam pre-mRNA processing factor 4 (PRP4) like 110 137 IPR014906 -
Ftr2g00568 422 MobiDBLite consensus disorder prediction 174 197 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ftr2g00568 K12817 pre-mRNA-splicing factor 18
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ftr Ftr-Chr2:10259650 Ftr9g00517 Ftr-Chr9:20771993 dispersed