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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ftr2g00906 ATGGGCAATTACAGGCTCAGATTATCAACTCTAATCCCCAATTCATGGCTCTACTCCTCCATCACAGCCACCAAACTCAAGAACAAACTAACCAAAACCCAACCCATCACTACTTCATCATCTTCACCCTCATCTTCTTCATCGATTTCAGCATCAAAACCTGCGACTAATCAAAGAAAATCATACTACTTCACCAGAGACCTCGTCGTACCCGACCAGATTACCCGCACTCATGACCCACCGTCGCCTAAAACCGATCACCAACCCGACCCGAGACGAAAATCATCCAAGAAGAAACGACCCATCACCCCAAAGAAACCAATTCGCCGGAAATCAGTGTCGCCGGAGCTCAGCCCCGCCAGAAAATGCAGCTGCGGGAGTCCCCCCGAACAATCTCTCATTCCCCCAAACGACGACGTTTATACGAAAGTTAACCTCCCACCGATCATAACCAAGCCCACGAAGCCAAACGAATTCGGGTCGGGTAAATGGGTGGTCGCCGGAGATCGCCGGAGTTCAACGGCGAACGACGGCGTAACGCGAAGTCCGGCGAGAAAAGCTAAGAACAACATTTATTCTCCTAGGTTGGGGAACAGGGTGAGGATCAACGGGATAAACGCCGGTGGCCGGAGAAGATCCGGCGACCGGCGGAGCTTGTCGGAAAGTATGGTGGTGGTGAAGACGACGGTGGATCCGTTTAGGGATTTTAAGGAATCGATGGTGGAGATGATAATGGGGAATAATATTACGAGTTCTAAAGATTTGGAAGATCTTCTTGCATGTTATTTATCATTGAATTCTGATGAATATCATGATTTGATCATTAAGGTATTTAAGGAAATATGGTTTGAGTGTACTGATGTTAGACTGTAG 873 47.88 MGNYRLRLSTLIPNSWLYSSITATKLKNKLTKTQPITTSSSSPSSSSSISASKPATNQRKSYYFTRDLVVPDQITRTHDPPSPKTDHQPDPRRKSSKKKRPITPKKPIRRKSVSPELSPARKCSCGSPPEQSLIPPNDDVYTKVNLPPIITKPTKPNEFGSGKWVVAGDRRSSTANDGVTRSPARKAKNNIYSPRLGNRVRINGINAGGRRRSGDRRSLSESMVVVKTTVDPFRDFKESMVEMIMGNNITSSKDLEDLLACYLSLNSDEYHDLIIKVFKEIWFECTDVRL 290
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ftr2g00906 290 ProSiteProfiles OVATE domain profile. 225 284 IPR006458 -
Ftr2g00906 290 Pfam DNA-binding domain 1 47 IPR025830 GO:0003677(InterPro)
Ftr2g00906 290 Pfam Transcriptional repressor, ovate 230 284 IPR006458 -
Ftr2g00906 290 MobiDBLite consensus disorder prediction 93 107 - -
Ftr2g00906 290 MobiDBLite consensus disorder prediction 30 63 - -
Ftr2g00906 290 NCBIfam uncharacterized plant-specific domain TIGR01568 223 284 IPR006458 -
Ftr2g00906 290 MobiDBLite consensus disorder prediction 30 140 - -
Ftr2g00906 290 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 41 285 IPR038933 GO:0045892(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ftr2g00906 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
2818139 Ftr Ftr2g00906 Ftr-Chr2:18217501 Ftr3g02929 Ftr-Chr3:102185955
2843435 Ftr Ftr4g00506 Ftr-Chr4:5768580 Ftr2g00906 Ftr-Chr2:18217501
3026831 Ftr Ftr2g00906 Ftr-Chr2:18217501 Ftr2g01215 Ftr-Chr2:32164707
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Ftr Ovate 6.2e-23 No_clan TF OFP