AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ftr4g03637 ATGGCGACTCGCGTTCTCCTTCGCACTCTTCTTTCCTCCGTCAATCAAACCCTAATCCCCCGTTCATTCACCAATTCATCTTATCTCCTCCGTCTCCGCCCCATCATCGCCGTCGCCGCCGCGAATATCCGCCAGTCCTCCGTCTCACCGGCGAATCTCCGTGCTTTCTCCACACGACCGACTACTTCGTCACTTAATGATTCGAACCCTAACTGGTCTAATCGTCCCCCGAAGGAGACGATTCTTCTCGATGGTTGCGATTTCGAACACTGGCTTGTGGTGATGGAGAAACCCGAAGGTGAGCCCACGAGAGATGAGATTATTGAATCGTACATCAATACCCTAGCTAAGGTTGTCGGCAGCTATGATGAAGCGAGGATGAAGATCTACTCTGTTTCGACAAGATGTTATTATGCTTTTGGAGCTTTAGTGTCTGAAGAGCTTTCTTACAAGCTTAAGGAGTTACCTGGAGTTCGTTGGGTGCTGCCTGATTCTTACTTGGATGTTAAGAACAAGGATTATGGAGGTGAACCTTTTATTGATGGGAAGGCTGTTCCTTATGATCCAAAGTACCATGAGGAATGGATCAGAAACAATGCTCGCGCCAATGAGAGAAACAGGAGGAATGACAGGCCTCGCAACTTTGATCGTTCAAGAAACTTTGAAAGAAGAAGAGAGAACATGCAAAGCAACCGTGGACCTCCCAACATGAGCGGGCCACCACCCAACAACATGGGTGGTCCACCGCCCAACATGGGTGGTCCACCGCCCAACATGGGTGGTCCACCGCCCAACATGGGTGGTCCACCGCCCAACATGGGTGGTCCACCGCCCAACATGGGTGGTCCACCGCCCAACAACATGGGTGGTCCACCGCCCAACAACATGGGTGGCCCACCACCGAACATGGCTGGTGGTCCACCAAATATGGGAGTAAGGCCCAATAACTGGAACGGCCCCCCACCACCCTACAGCGGAGGGCCGCCAAACATGGGAGGACCGAGGCCTAATATGACTCCTAACTACCAGCAGCAGGGGCGGTATGGACCAAATAATGGAAACATGCAGTATCAATCTGGGCCCGGTCCCAACAGTTATCCTCCAAATGCAGGCAGTGGAAACCCATATCAGCCTCAGGATGTACCTGGAAGAGACATGCCCCCTTCAGCCAACTATGAGTAA 1182 52.28 MATRVLLRTLLSSVNQTLIPRSFTNSSYLLRLRPIIAVAAANIRQSSVSPANLRAFSTRPTTSSLNDSNPNWSNRPPKETILLDGCDFEHWLVVMEKPEGEPTRDEIIESYINTLAKVVGSYDEARMKIYSVSTRCYYAFGALVSEELSYKLKELPGVRWVLPDSYLDVKNKDYGGEPFIDGKAVPYDPKYHEEWIRNNARANERNRRNDRPRNFDRSRNFERRRENMQSNRGPPNMSGPPPNNMGGPPPNMGGPPPNMGGPPPNMGGPPPNMGGPPPNMGGPPPNNMGGPPPNNMGGPPPNMAGGPPNMGVRPNNWNGPPPPYSGGPPNMGGPRPNMTPNYQQQGRYGPNNGNMQYQSGPGPNSYPPNAGSGNPYQPQDVPGRDMPPSANYE 393
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ftr4g03637 393 MobiDBLite consensus disorder prediction 235 307 - -
Ftr4g03637 393 MobiDBLite consensus disorder prediction 336 376 - -
Ftr4g03637 393 MobiDBLite consensus disorder prediction 203 229 - -
Ftr4g03637 393 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 15 229 IPR039206 GO:0005739(PANTHER)|GO:0016554(InterPro)|GO:0080156(PANTHER)
Ftr4g03637 393 MobiDBLite consensus disorder prediction 203 393 - -
Ftr4g03637 393 MobiDBLite consensus disorder prediction 314 335 - -
Ftr4g03637 393 Pfam Multiple organellar RNA editing factor 1, MORF domain 88 179 IPR054059 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ftr4g03637 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ftr Ftr-Chr14:5806110 Ftr4g03637 Ftr-Chr4:120005322 dispersed
Ftr Ftr-Chr16:696492 Ftr4g03637 Ftr-Chr4:120005322 dispersed
Ftr Ftr-Chr4:120005322 Ftr9g01416 Ftr-Chr9:69696800 dispersed
Ftr Ftr-Chr4:120005322 Ftr15g02084 Ftr-Chr15:80426402 transposed
Ftr Ftr-Chr4:120005322 Ftr4g00776 Ftr-Chr4:9130405 transposed