AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ftr4g03694 ATGTCGGAAGATGATCTACCTTATCACGTCAGAATCACCCCCTCCGGCGACTTGAAAACCGCCGGAAGATACGATTTCAACGGTCAATTGAGCTCGACCATGATCGCACACCCGAAGCTTGACCCTGTTTCCGGTGAGCTTTTCGCATTGAGTTACGATGTGATCCAAAAACCCTACCTGAAATACTTCCGATTCTCTCCCGACGGGAAGAAATCAAACGACGTAGCGATCGATTTGAAGATTCCGACGATGGTTCACGATTTCGCCATCACTGAGAACTTCGTGGTGGTGCCGGATCACCAGGTGGTGTTCAAGATGTCGGAGATGATCACCGGCGGATCGCCGGTGGTGTATGATAAAGAGAAAGTTTCACGATTTGGGGTTCTTGACAAATACGCAGAAAACGGGTCGGGTATAAAGTGGATCGAAGTACCCGATTGCTTCTGCTTTCACCTCTGGAACGCATGGGAAGAACCAGAGTCCGATGAAGTCGTCGTCATCGGATCTTGCATGACTCCGGCGGACTCCATTTTCAACGAAAGTGACCAAGAGTTAAAAAGCGTGTTATCGGAAATTCGCCTGAATTTAACCACCGGAAAATCCACCCGCCGGCGAATCATCTCGCCGGAGGAAGACGTCAATCTTGAAGCCGGAATGGTCAACAAGAATCTCCTCGGAAGAAAGTCAAAATTCGCTTATCTCGCCATTGCAGAACCATGGCCCAAGGTCTCTGGTTTCGCTAAAGTCGATCTTTCCACCGGAGAAACCAAAAAGTTCATCTACGGCGACAACAAGTACGGCGGCGAGCCTCTGTTTCTTCCCAATTCCACCACTAACGCCACCAGTACCACCGCCGAAGACGACGGTCATATACTGGCGTTTGTTCACGATGAATCCACATGGGAATCGGAGCTTCAGATCATCAACGCAATGACGATGGAATTATCGGCAACAGTGAAGCTACCATCGAGGGTTCCATATGGGTTTCACGGGACATTCATAAGCAGCAACGATTTAGCAACACAGGTGTGA 1032 49.42 MSEDDLPYHVRITPSGDLKTAGRYDFNGQLSSTMIAHPKLDPVSGELFALSYDVIQKPYLKYFRFSPDGKKSNDVAIDLKIPTMVHDFAITENFVVVPDHQVVFKMSEMITGGSPVVYDKEKVSRFGVLDKYAENGSGIKWIEVPDCFCFHLWNAWEEPESDEVVVIGSCMTPADSIFNESDQELKSVLSEIRLNLTTGKSTRRRIISPEEDVNLEAGMVNKNLLGRKSKFAYLAIAEPWPKVSGFAKVDLSTGETKKFIYGDNKYGGEPLFLPNSTTNATSTTAEDDGHILAFVHDESTWESELQIINAMTMELSATVKLPSRVPYGFHGTFISSNDLATQV 343
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ftr4g03694 343 PANTHER BETA-CAROTENE DIOXYGENASE 1 335 IPR004294 GO:0009570(PANTHER)|GO:0010436(PANTHER)|GO:0016121(PANTHER)|GO:0016702(InterPro)
Ftr4g03694 343 Pfam Retinal pigment epithelial membrane protein 1 335 IPR004294 GO:0016702(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ftr4g03694 K09840 9-cis-epoxycarotenoid dioxygenase [EC:1.13.11.51]
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Event-related genes

Select Gene_1 Gene_2 Event_name
98120 Ftr4g03694 Ftr8g00923
98121 Ftr4g03694 Ftr9g01780
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ftr Ftr-Chr4:120832182 Ftr6g00365 Ftr-Chr6:5744573 dispersed
Ftr Ftr-Chr15:9271622 Ftr4g03694 Ftr-Chr4:120832182 wgd
Ftr Ftr-Chr4:120832182 Ftr8g00923 Ftr-Chr8:11468487 wgd
Ftr Ftr-Chr4:120832182 Ftr9g01780 Ftr-Chr9:76761997 wgd