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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ftr4g03717 ATGCATTCCAAAATTGCAGCAACAATCGCATGGCTCGAAGCTGAATCACATCGCACAAACGCCGGTGAAATCTCCGGTGAGATGATCGACAAACAAACACTCATCGTTGAAATCTCCGATAAGATCATCGCCGGAGATCTCACCACCAAAATTCAAGCTGCAAGGGAGATTCGAACCTTAATTCGAAATCACAATGCCTCCGATAAGATTCGCGCCAAATTCGCTACCGCCGGCGTCATTCAACCGCTTGTTCTTATGCTTTACTCCAGAAATCACGATGCTCGTCAAGCGTCACTACTTGCGGTACTCAATCTCGCATCTAGAAACGAAATAAACAAAGAACAAATAGTGACGTGCGGCGCCATCCCTCCTCTCGTGGACCTCCTCAACTTACATAACAGCAGCACCTTGAGAGAATTAGCCACTGCTGCAATTTTAACTTTGTCGACGGCCCAACCCAACAAACAAACAATAATAAACTCCGGTGTCATACCCTTACTAGTTCAAATTCTCAGTTGTGGGACCATTCAAGGAAGAATTGATGTGGTCACCGCCCTTTATAACCTTACAACCTCAAAACAACCAACTGTAACCCCCGATGCTAAAGCAATCCCACCACTCATTAACCTCCTTAAAGAATGCAAAAAATCCACAAAATTCACTGAAAAAACAACATTTTTAGTTGAGATGATCTTGAAGTCTGAAGAAGGAAGATTAACGATCACAAACACTGTAGATGGGATTCTAACATTAGTGGAAACGATTGAAGACGGATCTTTAGTTAGCACTGAACGTGCGGTTAGTGCTTTACTTACATTGTGCTTAAGCTGCAGAAGTAAATACAGGGAACTTATACTGAACCAAGGTGCTATTCCTGGGCTTTTATGGTTAACCACGTATGGAACTTATCAAGGCCAAGACATGGCTCGGACCCTGTTGGATTTACTCAGGGACTCGCCTCCAGAAAAGAAACCGATTTCAATGGTTCTTGAGAAGATGGTTCAAGATATCGCGGCTCAGGTTGATGGCTCAGAAAAAAACTGCAACATTTGGTTCAAAGAATAA 1065 43.19 MHSKIAATIAWLEAESHRTNAGEISGEMIDKQTLIVEISDKIIAGDLTTKIQAAREIRTLIRNHNASDKIRAKFATAGVIQPLVLMLYSRNHDARQASLLAVLNLASRNEINKEQIVTCGAIPPLVDLLNLHNSSTLRELATAAILTLSTAQPNKQTIINSGVIPLLVQILSCGTIQGRIDVVTALYNLTTSKQPTVTPDAKAIPPLINLLKECKKSTKFTEKTTFLVEMILKSEEGRLTITNTVDGILTLVETIEDGSLVSTERAVSALLTLCLSCRSKYRELILNQGAIPGLLWLTTYGTYQGQDMARTLLDLLRDSPPEKKPISMVLEKMVQDIAAQVDGSEKNCNIWFKE 354
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ftr4g03717 354 ProSiteProfiles Armadillo-plakoglobin ARM repeat profile. 120 163 IPR000225 GO:0005515(InterPro)
Ftr4g03717 354 PANTHER U BOX DOMAIN-CONTAINING 46 318 - -
Ftr4g03717 354 SMART arm-5 108 150 IPR000225 GO:0005515(InterPro)
Ftr4g03717 354 SMART arm-5 151 191 IPR000225 GO:0005515(InterPro)
Ftr4g03717 354 SMART arm-5 67 107 IPR000225 GO:0005515(InterPro)
Ftr4g03717 354 Pfam Armadillo-beta-catenin-like repeat 112 149 IPR000225 GO:0005515(InterPro)
Ftr4g03717 354 Pfam Armadillo-beta-catenin-like repeat 152 190 IPR000225 GO:0005515(InterPro)
Ftr4g03717 354 Gene3D - 39 345 IPR011989 -
Ftr4g03717 354 SUPERFAMILY ARM repeat 45 322 IPR016024 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ftr4g03717 K08332 vacuolar protein 8
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Event-related genes

Select Gene_1 Gene_2 Event_name
98123 Ftr4g03717 Ftr8g00935
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ftr Ftr-Chr4:121044580 Ftr8g00935 Ftr-Chr8:11637151 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Ftr1g00344 . 1 276 U-box gene family AT3G07370 64.748 1.84e-132 374.0
Ftr1g00560 . 353 475 U-box gene family AT5G67530 45.522 1.13e-27 107.0
Ftr1g01801 ACH 344 496 U-box gene family AT1G71020 32.258 4.76e-15 76.3
Ftr1g02110 . 353 475 U-box gene family AT5G67530 47.015 2.67e-27 107.0
Ftr1g02606 WGDA 6 435 U-box gene family AT5G37490 41.309 5.84e-105 317.0
Ftr1g02609 WGDA 15 461 U-box gene family AT3G11840 37.118 7.68e-96 293.0
Ftr2g00152 ACH 237 464 U-box gene family AT2G33340 24.809 3.23e-13 68.6
Ftr2g00354 . 1 92 U-box gene family AT3G07370 64.894 2.85e-38 127.0
Ftr2g00355 . 1 460 U-box gene family AT3G07360 53.719 2.32e-173 493.0
Ftr2g00579 ACH 530 787 U-box gene family AT2G23140 26.923 1.47e-14 75.5
Ftr2g03164 ACH,WGDA 9 165 U-box gene family AT2G35930 64.331 3.89e-68 211.0
Ftr2g03369 . 448 632 U-box gene family AT2G28830 27.128 3.43e-13 66.2
Ftr2g03370 . 357 492 U-box gene family AT5G67530 40.541 6.53e-20 92.8
Ftr3g00091 . 7 405 U-box gene family AT2G35930 34.146 1.98e-70 226.0
Ftr3g00122 . 4 409 U-box gene family AT5G09800 45.215 3.09e-108 323.0
Ftr3g00269 . 256 425 U-box gene family AT2G33340 22.652 4.09e-06 47.0
Ftr3g00413 . 22 180 U-box gene family AT5G65500 32.075 1.33e-15 74.3
Ftr3g00446 . 1 671 U-box gene family AT1G60190 37.189 1.41e-144 435.0
Ftr3g00891 . 9 107 U-box gene family AT3G07370 31.0 1.10e-08 53.9
Ftr3g01001 . 501 827 U-box gene family AT2G23140 47.432 2.41e-84 270.0
Ftr3g01833 . 237 433 U-box gene family AT1G04510 23.502 8.65e-10 58.9
Ftr3g02914 . 138 410 U-box gene family AT2G35930 45.791 1.38e-81 250.0
Ftr3g02915 ACH 3 117 U-box gene family AT3G52450 63.478 6.37e-50 162.0
Ftr3g03131 . 337 451 U-box gene family AT2G33340 31.148 1.38e-08 55.1
Ftr4g00131 . 6 405 U-box gene family AT2G35930 33.902 1.16e-66 216.0
Ftr4g00208 . 544 811 U-box gene family AT2G23140 28.0 4.18e-16 79.0
Ftr4g00507 . 486 726 U-box gene family AT1G29340 65.863 2.69e-91 282.0
Ftr4g00508 . 1 440 U-box gene family AT1G29340 59.284 3.05e-165 481.0
Ftr4g00606 WGDA 339 465 U-box gene family AT5G67530 25.385 5.19e-10 57.0
Ftr4g00865 . 277 460 U-box gene family AT1G04510 25.397 2.79e-10 60.8
Ftr4g00968 ACH,WGDA 257 459 U-box gene family AT2G33340 27.315 9.80e-10 60.1
Ftr4g01058 ACH 237 465 U-box gene family AT2G33340 25.856 4.63e-15 74.3
Ftr4g01095 . 2 655 U-box gene family AT3G46510 67.02 0.0 863.0
Ftr4g03717 ACH 466 749 U-box gene family AT3G54790 35.473 8.54e-33 127.0
Ftr4g03852 . 352 491 U-box gene family AT5G67530 42.105 5.72e-29 116.0
Ftr4g03881 . 1 421 U-box gene family AT1G49780 65.485 0.0 536.0
Ftr5g02208 . 12 190 U-box gene family AT3G46510 57.542 4.69e-61 199.0
Ftr5g02209 . 212 647 U-box gene family AT3G46510 73.121 0.0 637.0
Ftr5g02299 . 353 475 U-box gene family AT5G67530 46.269 1.87e-27 107.0
Ftr5g02436 . 236 423 U-box gene family AT2G33340 26.702 3.57e-13 70.9
Ftr5g02483 . 6 760 U-box gene family AT3G54790 47.175 0.0 580.0
Ftr5g02530 . 357 477 U-box gene family AT5G67530 48.872 2.64e-31 127.0
Ftr5g02559 ACH 530 692 U-box gene family AT2G23140 34.545 4.30e-16 78.2
Ftr6g00542 . 237 524 U-box gene family AT2G33340 32.765 1.72e-37 144.0
Ftr6g01045 . 579 703 U-box gene family AT5G67340 52.308 2.85e-30 112.0
Ftr6g02104 . 1 460 U-box gene family AT3G07360 52.893 5.25e-170 485.0
Ftr6g02105 . 1 276 U-box gene family AT3G07370 64.748 2.78e-134 379.0
Ftr6g02362 . 393 485 U-box gene family AT5G67530 47.368 4.38e-19 79.0
Ftr6g02452 . 1 418 U-box gene family AT5G01830 51.288 1.02e-140 416.0
Ftr6g02453 . 447 664 U-box gene family AT5G01830 62.555 4.10e-86 266.0
Ftr6g02688 . 138 405 U-box gene family AT2G35930 41.901 7.45e-66 209.0
Ftr6g02689 ACH,WGDA 4 106 U-box gene family AT3G52450 72.816 1.07e-52 169.0
Ftr6g02690 ACH 11 151 U-box gene family AT2G35930 56.738 8.77e-48 158.0
Ftr6g02827 . 242 401 U-box gene family AT1G49780 32.927 1.07e-12 66.6
Ftr6g02861 ACH 591 759 U-box gene family AT2G23140 26.705 1.69e-07 52.4
Ftr7g02368 . 341 465 U-box gene family AT5G67530 27.941 7.69e-06 45.8
Ftr7g02434 . 546 819 U-box gene family AT2G23140 31.615 2.93e-25 107.0
Ftr7g02630 . 1 768 U-box gene family AT1G27910 58.915 0.0 891.0
Ftr7g02648 . 847 961 U-box gene family AT2G28830 70.94 1.98e-51 171.0
Ftr7g02659 . 351 491 U-box gene family AT5G67530 49.655 1.16e-36 134.0
Ftr7g02942 . 346 492 U-box gene family AT5G67530 28.662 6.92e-13 65.5
Ftr7g02943 . 346 492 U-box gene family AT5G67530 26.543 1.03e-09 58.5
Ftr7g03012 . 10 612 U-box gene family AT1G23030 57.971 0.0 656.0
Ftr8g00023 . 346 500 U-box gene family AT5G67530 54.839 2.97e-57 186.0
Ftr8g00062 . 516 742 U-box gene family AT2G23140 32.068 8.48e-20 93.2
Ftr8g00544 WGDA 234 422 U-box gene family AT2G33340 26.087 1.29e-07 52.4
Ftr8g00557 . 237 449 U-box gene family AT2G33340 25.664 6.23e-07 52.4
Ftr8g00935 ACH 476 748 U-box gene family AT3G54790 38.947 3.68e-35 134.0
Ftr8g02888 . 847 936 U-box gene family AT2G28830 72.826 4.11e-41 143.0
Ftr9g01170 . 353 477 U-box gene family AT5G67530 49.265 8.61e-31 115.0
Ftr9g01675 . 202 421 U-box gene family AT1G49780 64.091 1.43e-86 260.0
Ftr9g01676 . 1 93 U-box gene family AT1G49780 82.796 9.64e-54 171.0
Ftr9g01836 . 603 809 U-box gene family AT2G23140 24.286 1.12e-10 62.8
Ftr10g00903 WGDA 6 249 U-box gene family AT5G65920 65.6 3.34e-114 333.0
Ftr10g00904 WGDA 327 448 U-box gene family AT3G49810 72.951 1.04e-57 182.0
Ftr10g00974 . 3 180 U-box gene family AT4G36550 43.956 1.66e-43 153.0
Ftr10g01081 . 19 425 U-box gene family AT5G65500 41.026 4.34e-93 295.0
Ftr10g01183 . 1 435 U-box gene family AT5G37490 45.701 6.01e-125 367.0
Ftr10g01211 . 363 585 U-box gene family AT3G46510 28.947 3.89e-10 63.2
Ftr10g01455 . 451 496 U-box gene family AT5G67530 36.957 2.32e-06 41.2
Ftr10g01456 . 346 390 U-box gene family AT5G67530 44.444 4.69e-08 46.6
Ftr10g02042 . 93 411 U-box gene family AT2G35930 37.349 2.83e-76 238.0
Ftr10g02043 . 1 67 U-box gene family AT3G52450 65.672 2.09e-28 102.0
Ftr10g02370 . 7 402 U-box gene family AT2G35930 41.912 3.53e-105 315.0
Ftr11g00376 . 157 807 U-box gene family AT1G76390 28.025 3.56e-48 182.0
Ftr11g00418 . 25 797 U-box gene family AT1G20780 28.772 3.16e-62 225.0
Ftr11g00684 . 462 735 U-box gene family AT1G67530 28.777 3.81e-18 83.6
Ftr11g00782 . 527 818 U-box gene family AT2G23140 25.49 3.84e-13 70.5
Ftr11g00876 . 541 795 U-box gene family AT2G23140 47.191 2.65e-66 226.0
Ftr11g01054 . 53 660 U-box gene family AT5G42340 59.194 0.0 709.0
Ftr11g01203 . 353 477 U-box gene family AT5G67530 49.265 7.17e-31 115.0
Ftr12g00028 . 4 811 U-box gene family AT1G76390 60.688 0.0 962.0
Ftr12g00632 . 303 423 U-box gene family AT2G33340 28.8 9.98e-07 45.8
Ftr12g02201 . 1 595 U-box gene family AT5G67530 75.459 0.0 899.0
Ftr12g02924 . 371 485 U-box gene family AT2G28830 32.174 1.04e-10 56.2
Ftr12g02925 . 658 750 U-box gene family AT3G54790 42.708 7.51e-14 65.5
Ftr12g03172 . 352 493 U-box gene family AT5G67530 44.805 3.32e-32 125.0
Ftr12g03239 ACH,WGDA 4 829 U-box gene family AT2G23140 56.115 0.0 846.0
Ftr12g03319 WGDA 544 819 U-box gene family AT2G23140 35.106 3.02e-37 141.0
Ftr12g03464 WGDA 496 827 U-box gene family AT2G23140 45.562 1.01e-80 261.0
Ftr12g03573 WGDA 17 213 U-box gene family AT1G67530 39.0 2.57e-36 137.0
Ftr12g03747 WGDA 33 556 U-box gene family AT5G65200 52.328 5.83e-168 485.0
Ftr12g03831 . 233 434 U-box gene family AT2G33340 25.974 2.10e-10 60.8
Ftr12g03886 ACH 334 509 U-box gene family AT1G23030 30.0 8.91e-14 72.4
Ftr12g04146 . 734 805 U-box gene family AT2G28830 43.269 3.67e-18 78.6
Ftr13g00554 . 12 191 U-box gene family AT3G07370 27.222 1.09e-06 48.9
Ftr13g02019 . 4 809 U-box gene family AT1G76390 62.685 0.0 980.0
Ftr13g02159 WGDA 16 459 U-box gene family AT3G11840 38.596 9.63e-90 278.0
Ftr13g02160 WGDA 7 431 U-box gene family AT1G66160 42.0 7.72e-106 319.0
Ftr13g02248 . 23 621 U-box gene family AT1G71020 60.167 0.0 644.0
Ftr13g02275 . 581 711 U-box gene family AT2G23140 30.827 3.66e-08 55.5
Ftr13g02491 . 7 686 U-box gene family AT1G60190 43.948 0.0 556.0
Ftr14g00032 . 1 832 U-box gene family AT2G45910 50.0 0.0 836.0
Ftr14g00490 WGDA 234 422 U-box gene family AT2G33340 25.854 6.54e-08 53.1
Ftr14g00661 . 350 501 U-box gene family AT5G67530 41.25 2.36e-32 129.0
Ftr14g01243 . 340 501 U-box gene family AT5G67530 49.091 4.12e-43 159.0
Ftr15g00066 . 1 421 U-box gene family AT1G49780 65.321 0.0 520.0
Ftr15g01794 . 45 830 U-box gene family AT2G45910 32.838 3.91e-128 400.0
Ftr15g02083 . 834 960 U-box gene family AT2G28830 54.545 1.34e-36 132.0
Ftr15g02539 WGDA 385 496 U-box gene family AT5G67530 26.786 1.23e-06 43.9
Ftr16g00354 WGDA 33 556 U-box gene family AT5G65200 49.153 1.76e-160 466.0
Ftr16g00453 WGDA 8 279 U-box gene family AT1G27910 36.397 2.44e-39 152.0
Ftr16g00505 WGDA 498 827 U-box gene family AT2G23140 45.619 4.66e-77 251.0
Ftr16g00601 WGDA 563 819 U-box gene family AT2G23140 36.502 6.01e-39 145.0
Ftr16g00671 WGDA 576 829 U-box gene family AT2G23140 87.402 5.45e-153 444.0
Ftr16g00801 . 2 1038 U-box gene family AT5G15400 73.467 0.0 1580.0
Ftr16g01068 . 266 448 U-box gene family AT3G49810 60.109 2.58e-71 221.0
Ftr16g01069 . 1 116 U-box gene family AT5G65920 66.667 6.40e-48 157.0
Ftr16g01210 . 441 544 U-box gene family AT2G28830 33.929 1.24e-06 47.4
Ftr16g02024 . 477 801 U-box gene family AT1G20780 56.0 3.89e-116 352.0
Ftr16g02092 . 353 480 U-box gene family AT5G67530 48.921 1.38e-32 120.0
Ftr17g00091 . 279 455 U-box gene family AT2G33340 28.342 5.78e-10 59.3
Ftr17g00395 . 8 667 U-box gene family AT1G60190 40.177 7.18e-165 488.0
Ftr17g01545 ACH 366 621 U-box gene family AT3G46510 23.755 1.15e-08 55.8
Ftr17g01756 . 346 496 U-box gene family AT5G67530 46.358 6.58e-41 155.0
Ftr18g01357 WGDA 279 448 U-box gene family AT3G49810 70.588 4.95e-79 239.0
Ftr18g01358 WGDA 7 158 U-box gene family AT5G65920 70.968 1.02e-74 228.0
Ftr18g01404 ACH 4 828 U-box gene family AT2G23140 48.368 0.0 703.0
Ftr18g01992 . 33 255 U-box gene family AT5G01830 30.303 9.12e-25 101.0
Ftr18g01993 . 269 638 U-box gene family AT3G46510 47.132 1.48e-99 308.0
Ftr18g02072 . 24 833 U-box gene family AT4G25160 52.311 0.0 818.0
Ftr10000725.1g00002 . 7 410 U-box gene family AT2G35930 51.3 1.87e-150 431.0