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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ftr4g03771 ATGAAGCAGATGCAATCTTCTGTAGGTTTCATCGATTTCAAGCCCATGGCGTCTTCTTCATCTTCTTGGTGGCAGTCACTCTTCTCTCCGAACAAAAATTCGTTCACTGCACACTGTTTCAATCGCTTCAGAGAATACGGGGTGGCGTGGGATGTATTGGATATGTTTGTTTGCTTATATGTTAAGGAGTGGCTTTGTGCCATTAAAGCCAAATTTACATCACCAGAAGAGAATAAAGCATTAGCAAGTCTTAAGGAAATGGAGAAGATTATAGGGTATAAATTCAAGAAGAAGTTATTATTGCAACAAGCTCTTACACACCCAAGTTATCAAGGATCTGAAACCTATGAAAGACTTGAGTATGTTGGTGATTCAATTCTCAATTTTTTAATTAGTAAGCATCAATACTTTATGTACCCAAATCTCTCACCAGGGTCATTAACTGCTCTTCGAGCTGCTAATGTAGACACTGAGAAATTAGCACGTGTGGCTGTTAAATATAACTTCCATAGCTATCTTCGACATGAAAATCCCACGCTTAGTAAGCAAATTCGAGTATTTATTAAAGCCCTTGAAAAGTATCCATTTCATTCATATGGATTAATTGATGCTCCAAAGACTTTAGCTGATATCGTTGAATCCACAATTGGGGCTATCTACATTGACAGTAACTCTTCTATCGATACCACATGGGAGGTGGTTAAGGTTTTACTTGAGCCCATGATCACTCCTGAAATGCTTCAACAGAATCCAGTAAGGAAGCTGAATGAACTCTGCCACAAAAGGAAATTAAAGATAAGATTCAGAGACAAATGGTCAAAGGAAGGTGTTTATGAAGTTTTTATTGATAATCAACTCAAAGGAAAAGGTGAATACAAAGCCAAAAAGGAAATTGCACTCAATAGAGCAGCTGAGGATGCATGTAACACTATTTTGAACAATATCACTGCTAAAAACAATACATCTCAATAG 972 37.24 MKQMQSSVGFIDFKPMASSSSSWWQSLFSPNKNSFTAHCFNRFREYGVAWDVLDMFVCLYVKEWLCAIKAKFTSPEENKALASLKEMEKIIGYKFKKKLLLQQALTHPSYQGSETYERLEYVGDSILNFLISKHQYFMYPNLSPGSLTALRAANVDTEKLARVAVKYNFHSYLRHENPTLSKQIRVFIKALEKYPFHSYGLIDAPKTLADIVESTIGAIYIDSNSSIDTTWEVVKVLLEPMITPEMLQQNPVRKLNELCHKRKLKIRFRDKWSKEGVYEVFIDNQLKGKGEYKAKKEIALNRAAEDACNTILNNITAKNNTSQ 323
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ftr4g03771 323 Pfam Ribonuclease III domain 117 223 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Ftr4g03771 323 SUPERFAMILY dsRNA-binding domain-like 206 311 - -
Ftr4g03771 323 ProSiteProfiles Ribonuclease III family domain profile. 84 224 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Ftr4g03771 323 SMART riboneu5 99 247 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Ftr4g03771 323 CDD RIBOc 100 247 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Ftr4g03771 323 PANTHER DICER-RELATED 63 314 - GO:0003723(PANTHER)|GO:0004525(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0030422(PANTHER)
Ftr4g03771 323 Gene3D Ribonuclease III domain 73 246 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Ftr4g03771 323 ProSitePatterns Ribonuclease III family signature. 117 125 IPR000999 GO:0004525(InterPro)|GO:0006396(InterPro)
Ftr4g03771 323 SUPERFAMILY RNase III domain-like 83 244 IPR036389 GO:0004525(InterPro)|GO:0006396(InterPro)
Ftr4g03771 323 FunFam Endoribonuclease dicer-like 1 78 245 - -
Ftr4g03771 323 Gene3D - 247 322 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ftr4g03771 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ftr Ftr-Chr16:60401245 Ftr4g03771 Ftr-Chr4:121590858 dispersed