AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ftr4g03789 ATGGATCAAGTACCGGGATCAACAGGGACGAGTGCAGGATTCGCGTTGCGCCTCGGCCAAACCATATTCGCCTCAGCATCTCTTCTGTTCATGTCATTTGGTGTTCAATTCTACAGCTACACATCCTTCTGCTTCTTGGTGACAATCATGGGTCTGGTGATCCCATGGAGCTTCATATTAGCATTGATTGACGGATACTCGGTTCTCGTAACATCCCCAATTCGACGAAAGGGGATACTGTTCATAATCGTTGTTGGAGACTGGTTGTTGTCGACGCTCGCCCTCGGTGCCGCCTGTTCTGCCGCCGCGGTGGTGGATGTGTTGCTGACGGCCGGTGAGTTGGTCTGTGTTCCGAAGATATGCAGCCGGTATTTGGTTTCAACTGTGTTTGCGTTTTTGTCATGGTTTTTGTGTATGGGTTCTTCTTTGTTTAATATGTGGATTCTTCCATCTTTGTGA 459 48.58 MDQVPGSTGTSAGFALRLGQTIFASASLLFMSFGVQFYSYTSFCFLVTIMGLVIPWSFILALIDGYSVLVTSPIRRKGILFIIVVGDWLLSTLALGAACSAAAVVDVLLTAGELVCVPKICSRYLVSTVFAFLSWFLCMGSSLFNMWILPSL 152
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ftr4g03789 152 Pfam Casparian strip membrane protein domain 8 137 IPR006702 -
Ftr4g03789 152 PANTHER CASP-LIKE PROTEIN 5B3 1 151 IPR045009 GO:0016020(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ftr4g03789 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ftr Ftr-Chr4:121818365 Ftr7g01869 Ftr-Chr7:90576398 dispersed
Ftr Ftr-Chr4:121818365 Ftr12g03152 Ftr-Chr12:96230252 transposed