AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ftr4g03879 ATGGCGAAAATCAAATGCGGATGCAATGTGTTCTTCGCAATCTTCTTCGCCACAGTTGTTCTGTTCACGTATGCTTCATCGCTCAAGGAAGGACAAACGTGCGTGGATAATAGCAACTGTGACGCAGGCTTACACTGTGAGGCTTGTGTTGCAGACGGCAATGTTCGCCCGAGATGTACTCGCCTTCAGCCTATTAGTCCCTTTTCTAAGGTGAAAGGATTGCCGTTCAATCGGTACTCGTGGTTAACGACGCATAATTCGTTCGCTAAATTTGGAGAGAAGTCGGCCACCGGTTCCGTTGTTCTAGCTCCGACGAACCAGCAGGACTCTGTTAGTTCGCAGCTCGATAACGGTGTGAGAGGGCTGATGCTTGATATGTATGACTTTGAGAATGACATTTGGTTATGTCATTCATTTGGTGGCAAATGCTTCAACTATACAGCTTTTCAACCTGCTATCAATGTTCTGAAAGAGATTCGATTTTTCCTAGAAAAGAACCCAACTGAAATTGTAACCCTATTCATTGAAGATTATGTTACCTCACCAAAGGGTCTAACTAATGTCTTCAATGCTGCTGGCCTGAGGAAATACTGGTTTCCCGCAGCCCAAATGCCGAGTGATGGTAGGGACTGGCCCACAGTTGACTCAATGGTTCGCCAAAATTACCGTTTGGTAGTTTTCACTTCCAAATCTTCTAAACAGGCTACTGAAGGGATTGCCTATGAGTGGAAGTACTTGGTTGAAAACCAATATGGAACAGATGGGATGAAAAGTGGTTTATGCCCGAACCGTGCTGAATCAGCAGCAATGAACTCTACATCAAGATCACTTGTTTTAATGAACTATTTCCCAGATATGCCTGATATTACCCAAGCTTGCAAGCACAATTCTGGCCCATTAATAAGCATGATGAACACATGCCATGATGTCGCTGGTCAAAGGTGGCCTAATTTCATTGCTGTTGACTTTTACAAGAGGAGTGATGGTGGGGGTGCACCAGCAGCTGTAGATATGGCTAACGGTCAGCTGGTTTGTGGTTGTAACACCATTGCAGCATGCAGGCCAAACATGACCTTTGGAGCTTGTAACCTTCCAGAGGCTGGGGCTGCTCCAACTCCAATTTCAGCATTAAAAACCTCGGGGAACATCAGTGGTCGACCGGGTCATCTTGGATGGTTGTTTGGGTCAGGTTTGATTGCTATAACCTTGTGTTTTTAA 1218 45.24 MAKIKCGCNVFFAIFFATVVLFTYASSLKEGQTCVDNSNCDAGLHCEACVADGNVRPRCTRLQPISPFSKVKGLPFNRYSWLTTHNSFAKFGEKSATGSVVLAPTNQQDSVSSQLDNGVRGLMLDMYDFENDIWLCHSFGGKCFNYTAFQPAINVLKEIRFFLEKNPTEIVTLFIEDYVTSPKGLTNVFNAAGLRKYWFPAAQMPSDGRDWPTVDSMVRQNYRLVVFTSKSSKQATEGIAYEWKYLVENQYGTDGMKSGLCPNRAESAAMNSTSRSLVLMNYFPDMPDITQACKHNSGPLISMMNTCHDVAGQRWPNFIAVDFYKRSDGGGAPAAVDMANGQLVCGCNTIAACRPNMTFGACNLPEAGAAPTPISALKTSGNISGRPGHLGWLFGSGLIAITLCF 405
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ftr4g03879 405 SUPERFAMILY PLC-like phosphodiesterases 73 344 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
Ftr4g03879 405 CDD PI-PLCc-At5g67130-like 66 340 - -
Ftr4g03879 405 PANTHER UNCHARACTERIZED 38 353 IPR051057 GO:0008081(PANTHER)
Ftr4g03879 405 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 75 183 - -
Ftr4g03879 405 Gene3D Phosphatidylinositol (PI) phosphodiesterase 66 330 IPR017946 GO:0006629(InterPro)|GO:0008081(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ftr4g03879 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ftr Ftr-Chr12:95560670 Ftr4g03879 Ftr-Chr4:122726072 dispersed
Ftr Ftr-Chr12:97065657 Ftr4g03879 Ftr-Chr4:122726072 dispersed
Ftr Ftr-Chr18:63826919 Ftr4g03879 Ftr-Chr4:122726072 dispersed
Ftr Ftr-Chr18:63828177 Ftr4g03879 Ftr-Chr4:122726072 dispersed