AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ftr6g00111 ATGGAAAACGAGAACTTTATGGAAACACACTCCTTGTCCTCCCAAAATGCGACCAATACTGTTGCGATACAGCAGTACACTGCACTTGATGTTGCTAATGCTTTTGTGGATCAATATTATAAAGTTATGCAAAATATTCCTGGAGATGCTCATAACTTCTACAAGGATCAAAGCGTGCGAACCCATCCATGTGTTGATGGTTCAATGAAATCAGTAACAACAAAGAAGGATATCTGTGATGGGATCATGGCTTCCAATATCAAGAAATGGAATCCTGATATGGAAAGCGTGCATGCTCAGGATTCATTAATGGAATCAGTGCTTCTTACACTAACGGGCTCTGTGATTGACAATGATGGCGTGGCAAAAAACTTTGCTCAAACGTTTCTCTTGGCCCCACAAGAAGGTGGTGGCTTTTATGTGCATAATGATATTATCCAGTTTATAGAAATCAAGGTTTCAGAAACTTCACTTTCTCTTGAAGTCGTGACAGATCCTCCTGCTGCTCATGAAGCCAATGATACAGCAAAAGACTCCGCCCTGGAGACTGCACAGGCTACCAACAAGGATCAAACTGAAAAGTCTACATCCACAAAAGAGGATGTTGATACTAAAATTAAGGTTTCCGAGTCATTCAACAAGGATCAAACTGAAAAGTCTGCATCCACAAAAGAGGATGTTGATACTAAAATTAAGGTTTCTGAGTCATTAGAAGGAAAGGATCCACTTCCAATTGAATCAAAGAAGAAAAGTCAACCTACTGTTCAGTCAGCTCCAAACACCCAAGATTCAAAAAAAGAGTCTTATGCATCAATTTTGGCAAAAGAAGGTTCTGGATTATCCACTGCACAACTTTCTCCAAATGCTGTTGGAAAAGTTTTGCCAAAATCTGAAAAGCATGCAAGCACATCTCCTGTTGGACCCAAACCATCTGCCCACCATGTGAAATCACCAACAACTCCTAACAATGGTCCTTCAGAAAATATCTATGATGTCAAAGCGATTCGGGTCAAGGATCTACCACCAAAAATGACACAGGAATCACTACTAGAGGTGGTAAAGAAGTTTGGTTCGGTCAAACTGAAAAATATCCAGATCAAAGAATATTCACAGGATGGATACCGTTATGCATTCGTTGAATTTGATAACAACAAATCTGCCCATACTGCAGTGGAGGCTCGCTTCATCCGACTTGAGGATAGAGTATGTGAAATTCAGTATAAGAAAATTTCTAATCAAGGAGGTAATAATCACATGGGGAGGACAACACAAGGACGTGGAGGAAATAGAAACGAAAATTTCTGGGGCCGCGAGGGTGAAGGGCGTAGCAATGGCAACTGGGGAAACAAGTACAATGACCATGAGAACTCTGGTCAACGTTCGGGTCAAACCCGAGAGTATAACCATAGGCGCAACCGTTACTCTCAAGATCGCCCGTGA 1440 41.32 MENENFMETHSLSSQNATNTVAIQQYTALDVANAFVDQYYKVMQNIPGDAHNFYKDQSVRTHPCVDGSMKSVTTKKDICDGIMASNIKKWNPDMESVHAQDSLMESVLLTLTGSVIDNDGVAKNFAQTFLLAPQEGGGFYVHNDIIQFIEIKVSETSLSLEVVTDPPAAHEANDTAKDSALETAQATNKDQTEKSTSTKEDVDTKIKVSESFNKDQTEKSASTKEDVDTKIKVSESLEGKDPLPIESKKKSQPTVQSAPNTQDSKKESYASILAKEGSGLSTAQLSPNAVGKVLPKSEKHASTSPVGPKPSAHHVKSPTTPNNGPSENIYDVKAIRVKDLPPKMTQESLLEVVKKFGSVKLKNIQIKEYSQDGYRYAFVEFDNNKSAHTAVEARFIRLEDRVCEIQYKKISNQGGNNHMGRTTQGRGGNRNENFWGREGEGRSNGNWGNKYNDHENSGQRSGQTREYNHRRNRYSQDRP 479
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ftr6g00111 479 Gene3D - 18 154 - -
Ftr6g00111 479 MobiDBLite consensus disorder prediction 193 247 - -
Ftr6g00111 479 SUPERFAMILY NTF2-like 27 149 IPR032710 -
Ftr6g00111 479 CDD RRM-SF 335 393 - -
Ftr6g00111 479 MobiDBLite consensus disorder prediction 249 268 - -
Ftr6g00111 479 MobiDBLite consensus disorder prediction 170 268 - -
Ftr6g00111 479 Gene3D - 321 475 IPR012677 -
Ftr6g00111 479 CDD NTF2 27 150 IPR018222 -
Ftr6g00111 479 ProSiteProfiles Nuclear transport factor 2 domain profile. 31 148 IPR018222 -
Ftr6g00111 479 Pfam Nuclear transport factor 2 (NTF2) domain 31 148 IPR002075 -
Ftr6g00111 479 MobiDBLite consensus disorder prediction 178 192 - -
Ftr6g00111 479 MobiDBLite consensus disorder prediction 411 430 - -
Ftr6g00111 479 MobiDBLite consensus disorder prediction 282 328 - -
Ftr6g00111 479 MobiDBLite consensus disorder prediction 411 479 - -
Ftr6g00111 479 SUPERFAMILY RNA-binding domain, RBD 317 434 IPR035979 GO:0003676(InterPro)
Ftr6g00111 479 Pfam RNA recognition motif 335 393 IPR000504 GO:0003723(InterPro)
Ftr6g00111 479 MobiDBLite consensus disorder prediction 445 463 - -
Ftr6g00111 479 MobiDBLite consensus disorder prediction 464 479 - -
Ftr6g00111 479 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 26 455 IPR039539 GO:0003729(PANTHER)|GO:0005829(PANTHER)|GO:1990904(PANTHER)
Ftr6g00111 479 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 333 410 IPR000504 GO:0003723(InterPro)
Ftr6g00111 479 SMART rrm1-1 334 406 IPR000504 GO:0003723(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ftr6g00111 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
400317 Ftr11g00142 Ftr6g00111
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Ftr Ftr-Chr11:1944155 Ftr6g00111 Ftr-Chr6:1394784 wgd