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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glco1g01624 ATGGCACTTTTGGAGTCAAAAAAGGACAGAGGTGAGGTGAGGATTCATGAGAGTTTGGAAGAACTTAGCACTGATTTAGCGGATTACATAGCGGAATTATCTGAAGCATCGGTTAAAGAACGAGGTTTTTTCGCCATTGCTTTGTCGGGTGGTTCACTTATTAGCTTGATGAGGAATTTGTGTGGAGCGCCGTATAACAAGACTGTAGATTGGTCCAAGTGGTATATATTTTGGGCAGATGAACGTGTTGTTGCAAAGAATCATGTTGATAGTAACTATAAGCTTGCTAAAGATCATCTGTTGTCCAAGTTGCCTATTGTTCCAAGCCATGTACATTCAATCAATGACTCTCTCACAGCAGAAGAAGCTGCAAACGAGTACGAGTTTGTGATCAGACAGTTAGTCAGAACCCGTGTGGTTAACGTTTCTGATGTCAGCGACTGCCCAAAATTTGATCTGATCCTACTAGGTATGGGGCCAGATGGCCATGTGGCATCTTTGTTCCCAAACCATTCGGTTCTTGAAGAAAAGAATGAATGGGTGACATTCATCACCACATCCCCTAAACCACCACCTGAAAGAATCACATTCACATTGCCTGTTATCAACTCTGCAGCCAATGTGGCAGTGGTCGTGACAGGTATAGGAAAAGCAGAAGCTGCCCGTCTGGTGATAGATGACGTGGGACCTGAGTGCCCGGTTTTGCCAGCTAGGATGATTGAGCCAGCTGTAGGAAAACTGGTGTGGTTTTTGGATAACCAAGCTGGTTCAAAGCTCAAGTGCTTTTCTCAATTTTCTGAGTAG 804 44.15 MALLESKKDRGEVRIHESLEELSTDLADYIAELSEASVKERGFFAIALSGGSLISLMRNLCGAPYNKTVDWSKWYIFWADERVVAKNHVDSNYKLAKDHLLSKLPIVPSHVHSINDSLTAEEAANEYEFVIRQLVRTRVVNVSDVSDCPKFDLILLGMGPDGHVASLFPNHSVLEEKNEWVTFITTSPKPPPERITFTLPVINSAANVAVVVTGIGKAEAARLVIDDVGPECPVLPARMIEPAVGKLVWFLDNQAGSKLKCFSQFSE 267
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glco1g01624 267 Pfam Glucosamine-6-phosphate isomerases-6-phosphogluconolactonase 19 249 IPR006148 GO:0005975(InterPro)
Glco1g01624 267 PANTHER 6-PHOSPHOGLUCONOLACTONASE 5 260 IPR039104 -
Glco1g01624 267 CDD 6PGL 20 251 IPR005900 GO:0005975(InterPro)|GO:0006098(InterPro)|GO:0017057(InterPro)
Glco1g01624 267 Gene3D - 9 262 - -
Glco1g01624 267 FunFam Probable 6-phosphogluconolactonase 8 260 - -
Glco1g01624 267 Coils Coil 19 39 - -
Glco1g01624 267 SUPERFAMILY NagB-RpiA-CoA transferase-like 13 261 IPR037171 -
Glco1g01624 267 NCBIfam 6-phosphogluconolactonase 15 259 IPR005900 GO:0005975(InterPro)|GO:0006098(InterPro)|GO:0017057(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Glco1g01624 K01057 6-phosphogluconolactonase [EC:3.1.1.31]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3093116 Glco Glco1g01624 Glco-Chr1:80500209 Glco8g01244 Glco-Chr8:59135674
3158921 Glco Glco1g01624 Glco-Chr1:80500209 Glco7g04473 Glco-Chr7:472980551