AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glco1g01630 ATGGAAGAATCGCGTAACCCATTTCTCCAGCCTAATATTATTGACTCAGCCAATAGTTATAGCTCAAGATTCAACCCTGATAAGCGTGGGCGTCACAACTTCATTGGGCCTGGTTTTCCGGGGTTGAAGAAACGAGGTCATACTCTTGGTAACCGTTCATGGATCAAAATCGAGCAAAATGGGAACTCCAAAGTTGTTGAGCTAGATAAGGCAACTGTAATGAGACATTGTTCATTGCCTGCTAGAGATCTTCGTCTTTTGGATCCTCTTTTTATTTACCCGTCTACAATATTAGGCCGTGAGAAGGCTATTGTGGTTAGCCTTGAGCAGATTAGATGTATAATTACAGCTGATGAGGTGTTTCTTATGAATTCACTTGACGGCTCTGTAGTTCAATATAAAACGGAACTGTGCAAACGCCTTCATCAAGAAAAATACCACTCTGATGACTTACCATTCGAGTTTCGGGCGTTGGAACTAGCTTTGGAGTTTGCATGCCTCACTCTTGATACTCAGGTAAAAGAGTTGGAAATGGAAATTCATCCTGTGCTTGATGAACTTGCAAAGTCAATAAGTACTCTTAATCTTGAACGTGTTCGAAGATTCAAAGGCCACCTTTTGGCATTGACTCAACGGGTGCAAAAGGTCTGTGATGAAATAGAACAACTAATGAATGATGATGGAGATATGGCTGAGATGTATCTAACCGAGAAAAAACAAAGAAATTCTTGTACTGATCTATATGATCAAGTACAAGGAAGTAGTGTGATTGGGCCTGGAGTGGGACTAAAATCCGTGTCTGCCCCTGTATCTCCTGTGGGGTCCACAAGTGGTACAAATAAATTGCAAAGGGCGTTTAGTAATGTAAGTGCACATAAACATGGAAGCTTGGTGAGTTCATCTGTAACTGGTGATACTGATAACATTGATCAACTTGAGATGTTGCTGGAGGCGTACTTTGTTGGAATTGACAACACTCTAAACAAGTTGCTTTCGCTGAAGGAATATATTGATGACACGGAAGATCTGATCAACATTAAACTGGGAAATGTTCAGAACAAGCTGATTAAGTTCGAGTTGCTCTTGACAGCTGCTACTTTTTTGGCTACCTTATTTGCTGTTGTGACCGCAGTGTTTGGAATGAACTTTGAAGATGACGTTTTTGACGAGCCGAACAGATTTAATTGGGTCGTTTCAATCAGTGCAACATTATGTGGAGTCTTGTATATCTGCTTCTTGATTTATTTCAAACATAAGAAAGTTTTCCCTCTGTAG 1275 40.47 MEESRNPFLQPNIIDSANSYSSRFNPDKRGRHNFIGPGFPGLKKRGHTLGNRSWIKIEQNGNSKVVELDKATVMRHCSLPARDLRLLDPLFIYPSTILGREKAIVVSLEQIRCIITADEVFLMNSLDGSVVQYKTELCKRLHQEKYHSDDLPFEFRALELALEFACLTLDTQVKELEMEIHPVLDELAKSISTLNLERVRRFKGHLLALTQRVQKVCDEIEQLMNDDGDMAEMYLTEKKQRNSCTDLYDQVQGSSVIGPGVGLKSVSAPVSPVGSTSGTNKLQRAFSNVSAHKHGSLVSSSVTGDTDNIDQLEMLLEAYFVGIDNTLNKLLSLKEYIDDTEDLINIKLGNVQNKLIKFELLLTAATFLATLFAVVTAVFGMNFEDDVFDEPNRFNWVVSISATLCGVLYICFLIYFKHKKVFPL 424
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glco1g01630 424 MobiDBLite consensus disorder prediction 1 21 - -
Glco1g01630 424 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 39 421 IPR039204 GO:0015095(PANTHER)|GO:0015693(PANTHER)
Glco1g01630 424 CDD Mrs2-Mfm1p-like 54 421 IPR039204 -
Glco1g01630 424 Pfam Magnesium transporter MRS2-like 59 242 - -
Glco1g01630 424 FunFam Magnesium transporter MRS2-1 41 125 - -
Glco1g01630 424 Coils Coil 206 226 - -
Glco1g01630 424 Gene3D Magnesium transport protein CorA, transmembrane region 127 355 - -
Glco1g01630 424 Gene3D Magnesium transport protein CorA, transmembrane region 362 420 - -
Glco1g01630 424 Gene3D - 44 125 - -
Glco1g01630 424 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 361 413 IPR045863 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Glco1g01630 K16075 magnesium transporter
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Event-related genes

Select Gene_1 Gene_2 Event_name
98348 Glco1g01630 Glco7g02745
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3093121 Glco Glco1g01630 Glco-Chr1:80850403 Glco2g06457 Glco-Chr2:656905619
3158924 Glco Glco1g01630 Glco-Chr1:80850403 Glco4g05952 Glco-Chr4:563288855
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Glco1g01630 ACH 1 421 MRS2 gene family AT2G03620 64.651 2.47e-177 499.0
Glco2g06457 ACH 1 443 MRS2 gene family AT1G80900 78.076 0.0 692.0
Glco2g06550 . 254 434 MRS2 gene family AT1G16010 62.264 1.38e-80 245.0
Glco3g02135 . 54 436 MRS2 gene family AT3G58970 71.608 0.0 552.0
Glco3g04658 . 47 484 MRS2 gene family AT3G19640 66.521 0.0 578.0
Glco4g01413 ACH 123 459 MRS2 gene family AT5G22830 75.444 5.05e-174 493.0
Glco4g05952 ACH 1 442 MRS2 gene family AT1G16010 81.39 0.0 720.0
Glco6g01331 ACH 1 442 MRS2 gene family AT1G16010 74.107 0.0 627.0
Glco6g05264 . 1 386 MRS2 gene family AT5G09690 66.582 1.40e-180 505.0
Glco7g00345 . 13 394 MRS2 gene family AT5G64560 79.581 0.0 553.0
Glco7g01688 . 1 81 MRS2 gene family AT1G80900 57.317 2.26e-19 80.1
Glco7g06157 . 47 484 MRS2 gene family AT3G19640 58.206 4.91e-170 486.0
Glco8g02549 ACH 123 459 MRS2 gene family AT5G22830 80.119 0.0 528.0
Glco9g00418 . 5 386 MRS2 gene family AT5G09690 65.365 1.28e-172 484.0
Glco9g03222 . 47 484 MRS2 gene family AT3G19640 63.871 0.0 552.0
Glco10000262.1g00001 . 203 347 MRS2 gene family AT1G16010 50.98 5.81e-35 124.0