AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glco1g01644 ATGGGTCTACTCGATTCTCGTTTCTTGGTCGCTTTTCCAACAGAGGGAGTCATTTCGGGTTTGAAGATGTATGTTGTGGATAGTAGAGGAGGAGCAATAGCATGCATGCTGCTAGCTCTCTTTTTTTTAGGAACATGGCCTGCCATTCTAACGTTGTTAGAAAGACGTGGTCGGCTTCCTCAGCACACTTATCTTGATTACACAATCACCAATCTTCTGGCTGCTGTCATAATCGCTTTTACATTTGGGGAATTCGGCCATACCAATGATGATATACCCAATTTCCTAGTCCAGCTGTCACAAAATAATTGGCCGAGTGTTTTATTTGCCATGGGGGGCGGAGTGGTCTTAAGCCTCAGCAATCTTTCAATGCAATATGCATGGGCATTTTCCGGTTTATCAGTAACCACGGTGATCTGCTCAAGTATTACCGTTGTTATAGGTACAACTTTGAACTACTTTTTAGATGAAAGAATCAACAGGGCCGAGATACTTTTCCCAGGTGTTGTGTGCTTCTTGATTGCTGTTTGTTTCGGTTCTCTGGTGCATACATCCAACGCCAAGGATAATGAGGCAAAGCTTAATAAAGTGGAAGATCCTCACATAGGTGGAAAAGGATCAGTTAGTAACGGAGCAGACATGAATTCAAGAAAGGATTTGGAGCATGGATCTGGTAATGCAGGGAAGGCAAATACAGGAACTGCCAATTTTCTTATTGAGCTTGAGAGCAGAAGAGCAATCAAGCTGTTTGGGAAAAGTACTTTGACTGGTTTGGCCATATGTTTATTTTCCGGACTTTGTTGCTCTCTCTTCACACCGCTTTTTAATCTTGCAACGAATGACCAATGGCATACATTGGAAGACGGTGTCCCTCACTTAAGTGTCTACACAACTTTTTTCTACTTTTCTTGTTCATGTTTTGTGATTGCGATAATCTTAAACATTAACTTCCTTTACCACCCAATGTTCAATTTGCCTCGATCTTCAATCAAGACATATTTGAATGACTGGGACGGTCGAGGTTGGGCAATTCTGGCTGGTTTCTTGTGTGGTTTTGGGAATGGTCTCCAGTTTATGGGAGGCCAAGCTGCTGGTTATGCTGCAGCAGACGCGGTTCAGGCGCTTCCACTTGTGAGTACCTTTTGGGGTGTGCTCCTTTTTGGTGAATACCATAAATCATCACGAAGAACATATGTACTTCTCATAGGCATGCTTTCCATGTTTGTTGTGGCTGTTGGACTTCTTATGGCGTCATCTGGACATCGAAAGATTAGTGACATTACCTTGAGATGA 1293 42.85 MGLLDSRFLVAFPTEGVISGLKMYVVDSRGGAIACMLLALFFLGTWPAILTLLERRGRLPQHTYLDYTITNLLAAVIIAFTFGEFGHTNDDIPNFLVQLSQNNWPSVLFAMGGGVVLSLSNLSMQYAWAFSGLSVTTVICSSITVVIGTTLNYFLDERINRAEILFPGVVCFLIAVCFGSLVHTSNAKDNEAKLNKVEDPHIGGKGSVSNGADMNSRKDLEHGSGNAGKANTGTANFLIELESRRAIKLFGKSTLTGLAICLFSGLCCSLFTPLFNLATNDQWHTLEDGVPHLSVYTTFFYFSCSCFVIAIILNINFLYHPMFNLPRSSIKTYLNDWDGRGWAILAGFLCGFGNGLQFMGGQAAGYAAADAVQALPLVSTFWGVLLFGEYHKSSRRTYVLLIGMLSMFVVAVGLLMASSGHRKISDITLR 430
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glco1g01644 430 MobiDBLite consensus disorder prediction 195 214 - -
Glco1g01644 430 PANTHER UREIDE PERMEASE 1-RELATED-RELATED 23 423 IPR030189 GO:0005274(PANTHER)|GO:0015505(PANTHER)|GO:0016020(InterPro)|GO:0016020(PANTHER)|GO:0022857(InterPro)|GO:0071705(InterPro)
Glco1g01644 430 Pfam Ureide permease 63 418 IPR009834 GO:0016020(InterPro)|GO:0071705(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Glco1g01644 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Glco Glco-Chr1:81221949 Glco1g01646 Glco-Chr1:81310355 proximal
Glco Glco-Chr1:81218045 Glco1g01644 Glco-Chr1:81221949 tandem