AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glco3g00116 ATGAGCTTGAAAAAGCGATTTGTATCAAAATCAGTGATAATGTTACTGATGTTGATATTTATGGTTGTATTAGTGGGGTTATTATCTCAGTTTAATCTTTCTAATTATAGTAATACCAACAATGAGTTTACATTTCAAGATTATTTGTTGGTTAATGATAAAAAGATTGCATTTTTATTCCTTGTTAGAGATCATCTCCCTCTTGATTTCCTTTGGCATCATTTTTTTAAGAATGCAGATCCTGATAATTTCACAATTTACATACATTCCAAGCCTGGCATTCTCTTCGATGACTCCGTTACCAAATCACCTTTCTTCTACAATCGGCAGTTGAGGAACAGTGTTGAGGTCGGTTGGGGTACGGCAACTATGATTGAAGCAGAGAAGCTGTTGTTCAAGGCAGCCCTTGACGATCCCACAAATCAAATATTCGTCCTCCTCTCTGACAGCTGCGTCCCACTGTATAATTTCAGTTATATATACAACTATCTCATGTCATCTCCGCGAAGTTTTGTGGACAGCTTTATAGATGTGGCGGATGATCCTAGGGAAAAACGCTATAACCCGGAGATGTCCCCTGACATACCCGAAGACAAATGGCGCAAAGGATCCCAGTGGATCACGTTGGTTAGAAGACATGCAGAGGTGGTTGCATACGATGATGCTGTTTTCCCGATCTTTGAAAAACACTGCAAGCGGCGGCCACTCCTAGACTTGAGCAAGGGAAACGAGTCTCTTATAGAACAACAGCAACACAATTGCATCCCAGATGAACATTATGTCCCCACCTTACTTGTGATGCGGGGATTTGGAGATGAGTTGGAGCGAAGAACGTTAACTTATTCTCTATGGAATCAGTCTACCGAAACCATGGATACACAAGGCTGGCACCCTGTAACTTTTGGTTATGAAGGTGCTAGCGAGAAAAATATTCAAAACATCAAGGACATTGACCATGTTTATTTCGAGTCTGAAAATCGGACTGAATGGTGTGGTGGTAAGATTAGTGGTGGTCCGTGTTATTTATTTGCTAGAAAATTCTCGCGTGGTGCAGCCATGCGCCTTTTGACCAATGGAGTAGTCGGTCCCTATGACCCCAACACTGTTTTTTTAGACCCAACATAG 1125 41.42 MSLKKRFVSKSVIMLLMLIFMVVLVGLLSQFNLSNYSNTNNEFTFQDYLLVNDKKIAFLFLVRDHLPLDFLWHHFFKNADPDNFTIYIHSKPGILFDDSVTKSPFFYNRQLRNSVEVGWGTATMIEAEKLLFKAALDDPTNQIFVLLSDSCVPLYNFSYIYNYLMSSPRSFVDSFIDVADDPREKRYNPEMSPDIPEDKWRKGSQWITLVRRHAEVVAYDDAVFPIFEKHCKRRPLLDLSKGNESLIEQQQHNCIPDEHYVPTLLVMRGFGDELERRTLTYSLWNQSTETMDTQGWHPVTFGYEGASEKNIQNIKDIDHVYFESENRTEWCGGKISGGPCYLFARKFSRGAAMRLLTNGVVGPYDPNTVFLDPT 374
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glco3g00116 374 Pfam Core-2-I-Branching enzyme 56 314 IPR003406 GO:0016020(InterPro)|GO:0016757(InterPro)
Glco3g00116 374 PANTHER CORE-2-I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED 13 356 IPR044174 GO:0016757(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Glco3g00116 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Glco Glco-Chr3:8662551 Glco7g01966 Glco-Chr7:334646424 dispersed
Glco Glco-Chr3:8662551 Glco3g02240 Glco-Chr3:165406017 transposed