AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glco3g00130 ATGGGTACTCTATTCAAAGCGAGCTTGTTCTTGTCGTTCCTGTTGGTTCTTCTCGCACCTACTGCTTATTCAGCGGCTAATGGTAAATTGGTTAGAGTTGGGCTAAAGAAGAGGAAGGTCAACCAATTGAACCAACTTGGCCACGCAGGCTTAAAAGAAAGATATGCTGGAAGAAATTCCGGTATCCTTGGTGATATCAGGGACTCAGATAGTGACGCCATTGCTCTAACCAACTACATGGATGCTCAGTATTATGGTGAGATTGGTGTCGGCACTCCACCTCAGAAGTTCACCGTGATTTTTGATACAGGAAGTTCTAATCTTTGGGTGCCTTCTGCAAAATGCTACTTCTCAGTGGCTTGCATGTTCCACCGAAAGTATAAGTCTGGCCAATCAAGTACTTATAAGAAAAACGGGAAATCTGCTGCAATTCAATATGGAACTGGCTCGATCTCAGGGTTTTTTAGCCAAGATTCTATCACACTTGGTGATCTTGTTGTTAACGAGCAGGATTTTATAGAGGCAACCAAAGAGCCTGGAGTAACTTTCGTGGCAGCGAAATTTGACGGTATTCTTGGCCTTGGATTTAAAGAAATATCTGTTGGGGATGCTGTTCCTGTTTGGTACAACATGGTGGAACAAGGTCTGGTTCAAGAACCTATATTTTCATTTTGGCTTAATCGCAATGTCGAAGAGACTGAAGGGGGCGAACTTGTGTTTGGCGGCATTGATGCTAATCATTTTAAGGGTGATCACACGTATGTCCCCGTGACTCAAAAAGGCTATTGGCAGTTCGACATGGGTGATGTCCTTATTGGTGACAACTCAACTGGATTTTGCTCCGATGGTTGTGCAGCAATTGCTGACTCTGGAACCTCTTTGATTGCTGGTCCAACGGCCGTTATTACTCAAATCAATGAAGCCATTGGTGCTTCCGGTGTTATGAGCCAGCAATGCAAGACATTGGTCGATAACTATGGGAAGGCTATTATTGAGATGCTGTTAACTGAGACACGGCCTGATAAAGTCTGCTCTCGAATGAATCTATGCATCTTTGATGGATCTCATGATACCAGCATGATCATCGAGAGCGTGGTTGACAAGAACAATGGCAAATCTTCTGGTTTGCGTGATGACATGTGTAACTATTGCGAGATGGCAGTTGGTTGGATGGAAAACCAGATTAAGAGGAACCAAAGTGAAAAAGATATAATCCAATACGCTGATCAGCTCTGCGAGAAGTTGCCGAGTCCCATGGGAGAATCCGGAGTTGACTGCAACAAACTTTCCTCCATGCCCAATGTCGCCTTTACTATAGGTGGTCGAACGTTTGACCTCTCCCCTAAAGAGTATATCTTGAAAGTTGGCGAGGGAAAAGCAGCCCAATGCATCAGCGGATTCACTGCTATGGACGTGGCACCTCCTCGTGGACCTCTTTGGATCCTGGGTGATATATTCATGGGTAAATACCATACAGTATTCGACTATGGTAACGCACGAGTTGGATTTGCAGAAGCAGCTTAA 1524 44.55 MGTLFKASLFLSFLLVLLAPTAYSAANGKLVRVGLKKRKVNQLNQLGHAGLKERYAGRNSGILGDIRDSDSDAIALTNYMDAQYYGEIGVGTPPQKFTVIFDTGSSNLWVPSAKCYFSVACMFHRKYKSGQSSTYKKNGKSAAIQYGTGSISGFFSQDSITLGDLVVNEQDFIEATKEPGVTFVAAKFDGILGLGFKEISVGDAVPVWYNMVEQGLVQEPIFSFWLNRNVEETEGGELVFGGIDANHFKGDHTYVPVTQKGYWQFDMGDVLIGDNSTGFCSDGCAAIADSGTSLIAGPTAVITQINEAIGASGVMSQQCKTLVDNYGKAIIEMLLTETRPDKVCSRMNLCIFDGSHDTSMIIESVVDKNNGKSSGLRDDMCNYCEMAVGWMENQIKRNQSEKDIIQYADQLCEKLPSPMGESGVDCNKLSSMPNVAFTIGGRTFDLSPKEYILKVGEGKAAQCISGFTAMDVAPPRGPLWILGDIFMGKYHTVFDYGNARVGFAEAA 507
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glco3g00130 507 Gene3D - 314 416 - -
Glco3g00130 507 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 286 297 IPR001969 GO:0004190(InterPro)|GO:0006508(InterPro)
Glco3g00130 507 ProSiteProfiles Saposin B type domain profile. 314 354 IPR008139 -
Glco3g00130 507 SUPERFAMILY Saposin 315 416 IPR011001 -
Glco3g00130 507 ProSiteProfiles Peptidase family A1 domain profile. 84 504 IPR033121 -
Glco3g00130 507 FunFam Lysosomal aspartic protease 70 312 - -
Glco3g00130 507 Gene3D Acid Proteases 31 242 IPR021109 -
Glco3g00130 507 Pfam Eukaryotic aspartyl protease 83 506 IPR033121 -
Glco3g00130 507 ProSiteProfiles Saposin B type domain profile. 377 418 IPR008139 -
Glco3g00130 507 CDD phytepsin 74 505 IPR033869 GO:0004190(InterPro)
Glco3g00130 507 Pfam Saposin-like type B, region 1 379 416 IPR007856 GO:0006629(InterPro)
Glco3g00130 507 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 99 110 IPR001969 GO:0004190(InterPro)|GO:0006508(InterPro)
Glco3g00130 507 SUPERFAMILY Acid proteases 10 506 IPR021109 -
Glco3g00130 507 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 12 506 IPR001461 GO:0004190(PANTHER)|GO:0004190(InterPro)|GO:0006508(PANTHER)|GO:0006508(InterPro)
Glco3g00130 507 Pfam Saposin-like type B, region 2 317 350 IPR008138 -
Glco3g00130 507 PRINTS Pepsin (A1) aspartic protease family signature 480 495 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Glco3g00130 507 PRINTS Pepsin (A1) aspartic protease family signature 90 110 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Glco3g00130 507 PRINTS Pepsin (A1) aspartic protease family signature 236 249 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Glco3g00130 507 PRINTS Pepsin (A1) aspartic protease family signature 286 297 IPR001461 GO:0004190(InterPro)|GO:0006508(InterPro)
Glco3g00130 507 FunFam Vacuolar aspartic proteinase 399 506 - -
Glco3g00130 507 Gene3D Acid Proteases 243 507 IPR021109 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Glco3g00130 K08245 phytepsin [EC:3.4.23.40]
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Event-related genes

Select Gene_1 Gene_2 Event_name
99383 Glco3g00130 Glco7g06583
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Glco Glco-Chr3:9030080 Glco3g02686 Glco-Chr3:277786704 dispersed
Glco Glco-Chr3:9030080 Glco7g06583 Glco-Chr7:566885362 wgd