AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glco3g00265 ATGGCGGCTGCTGCACCTAATCTCCATATCCAAACACCCCTTTACACCCCCAAAACCCTACACAAAACCCTTATCCCAAACACCCTAAACACCCCAAAAAGAGCCTTTTTCTTCAAACCCATCAAAGCCCAGCTCATCTCCCAAACACCCCCCCAAACCTTCACTCACTGTTTTACCAAACACCCAGATGGGTACTTGTACGTTGAGAAAACCAAAGTGGAGGAAATAATGCAAGTGGTTGAAAAAAGGCCATTTTATTTGTACAGTAAAGCTCAGATTACTAGGAATGTGGAGGCTTATAAGGAGGCTTTGGAGGGTTTGGATGTTAGTGTGATTGGCTATGCGATAAAAGCGAATAATAACTTTTTGATTTTGAAGCATTTGAGGGGTTTAGGTTGTGGGGCTGTTTTGGTTAGTGGGAATGAGTTGAGGTTGGCTTTGAAAGCTGGTTTTGATCCTACAAGGTGTATTTTCAATGGAAATGGTAAGCTTTTGGAGGATCTCGTTCTTGCTGCTCAAGAAGGTGTATTTGTGAACATAGACAGTGAATTTGATTTGGATAACATTGTATCCGCTGCAAGAATTGCTGGAAAGAAAGTCAATGTTTTGCTTCGAATCAATCCTGATGTTGACCCTCAGGTTCATCCTTATGTTGCCACTGGGAACAAGAATTCCAAATTCGGCATCAGAAATGAAAAGTTGCAATGGTTTTTGGACCAAGTGAAGTCGTATCCGGATGAACTTAAGCTAGTTGGTGCTCATTGTCATCTTGGATCAACCATTACCAAGGTTGACATATTTAGAGACGCTGCAGAAATTATGGTGAAGTTCATTGACGAAATTCGAGCTCAAGGGTTTGACATTAGTTATTTGAACATTGGAGGTGGTCTTGGGATTGATTATTATCATACTGGTACCGTTCTTCCAACACCAAGAGACCTCATCGACACGGTGCGGGATCTAGTCAAGTCTCGAAACCTTAATCTGATCATTGAACCCGGGAGGTCACTTATTGCGAATACTTGTTGCCTTGTTAACCGCGTCACAGGTGTAAAAACAAATGGCACAAAAAACTTTATTGTGATTGATGGCAGCATGGCTGAACTTATCCGTCCTAGCTTATACGATGCTTATCAACACATTGAGCTAGTTTCTCCTCCACCACAAGATGCTGCCGTTTCAACTTTTGACGTTGTGGGCCCGGTTTGCGAGTCTGCTGATTTCTTGGGAAAGAATAGGGAACTTCCTGCTCCAGCCGCGGGTTCTGGGCTTGTAGTTCATGATGCCGGTGCCTACTGCATGAGCATGGCTTCAACTTACAACCTCAAGATGCGCCCACCAGAGTATTGGGTTGAAGAAGATGGATCGGTATCCAAAATCAGGCATGGGGAGACTTTTGACGATCATATGAGATACTTCGAGGGACTCTAG 1431 43.54 MAAAAPNLHIQTPLYTPKTLHKTLIPNTLNTPKRAFFFKPIKAQLISQTPPQTFTHCFTKHPDGYLYVEKTKVEEIMQVVEKRPFYLYSKAQITRNVEAYKEALEGLDVSVIGYAIKANNNFLILKHLRGLGCGAVLVSGNELRLALKAGFDPTRCIFNGNGKLLEDLVLAAQEGVFVNIDSEFDLDNIVSAARIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDQVKSYPDELKLVGAHCHLGSTITKVDIFRDAAEIMVKFIDEIRAQGFDISYLNIGGGLGIDYYHTGTVLPTPRDLIDTVRDLVKSRNLNLIIEPGRSLIANTCCLVNRVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPPPQDAAVSTFDVVGPVCESADFLGKNRELPAPAAGSGLVVHDAGAYCMSMASTYNLKMRPPEYWVEEDGSVSKIRHGETFDDHMRYFEGL 476
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glco3g00265 476 SUPERFAMILY Alanine racemase C-terminal domain-like 316 471 IPR009006 GO:0003824(InterPro)
Glco3g00265 476 FunFam Diaminopimelate decarboxylase 90 336 - -
Glco3g00265 476 PRINTS Diaminopimelate decarboxylase signature 132 149 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Glco3g00265 476 PRINTS Diaminopimelate decarboxylase signature 220 229 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Glco3g00265 476 PRINTS Diaminopimelate decarboxylase signature 440 462 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Glco3g00265 476 PRINTS Diaminopimelate decarboxylase signature 357 375 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Glco3g00265 476 SUPERFAMILY PLP-binding barrel 83 340 IPR029066 -
Glco3g00265 476 PANTHER DIAMINOPIMELATE DECARBOXYLASE 51 472 - GO:0008836(PANTHER)|GO:0009089(PANTHER)|GO:0009507(PANTHER)
Glco3g00265 476 FunFam Diaminopimelate decarboxylase 318 470 - -
Glco3g00265 476 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 91 339 IPR022644 GO:0003824(InterPro)
Glco3g00265 476 ProSitePatterns Orn-DAP-Arg decarboxylases family 2 pyridoxal-P attachment site. 114 132 IPR022653 -
Glco3g00265 476 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 83 470 IPR009006 GO:0003824(InterPro)
Glco3g00265 476 Pfam Pyridoxal-dependent decarboxylase, C-terminal sheet domain 340 430 IPR022643 GO:0003824(InterPro)
Glco3g00265 476 NCBIfam diaminopimelate decarboxylase 61 471 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Glco3g00265 476 CDD PLPDE-III-DapDC 84 451 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Glco3g00265 476 Gene3D Alanine racemase 90 336 IPR029066 -
Glco3g00265 476 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 247 260 IPR000183 GO:0003824(InterPro)
Glco3g00265 476 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 114 132 IPR000183 GO:0003824(InterPro)
Glco3g00265 476 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 134 146 IPR000183 GO:0003824(InterPro)
Glco3g00265 476 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 329 348 IPR000183 GO:0003824(InterPro)
Glco3g00265 476 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 430 443 IPR000183 GO:0003824(InterPro)
Glco3g00265 476 ProSitePatterns Orn-DAP-Arg decarboxylases family 2 signature 2. 283 298 IPR022657 -
Glco3g00265 476 Hamap Diaminopimelate decarboxylase [lysA]. 73 474 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Glco3g00265 K01586 diaminopimelate decarboxylase [EC:4.1.1.20]