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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glco3g00365 ATGGATAACATCATAGATGCTATGAACAACGCGTATCAAGAACTTATAAATGCAGTCGCAAACACCCTCGAAGCAAAAGAAGCCTCAGGTGGTCAAGTTACTGCTGCAACAGATGCTGCACTTGAAAACCTCAAACAAAGATGGGAACTATTTCGAGTCGCCTGTGATCAAGCTGAGGAGTTTGTTGAGTCGCTGAAACTTAGAATTGGGTCTGAATGCTTGGTGGATGAAGCCACAGGGTCGGTTGCTGGGAAGCCAGGGCAAGCCGTGACACCTGGACTTCCACCTATTAGTGCAGTTCGGTTGGAACAGATGAGTAAAGCTGTTCGTTTACTAGTAATTGAACTTCAAGGTTCTGGATCTGCAGGGAACTTATCAGTGCCTCAACACTCTCCTGCTCCTTTTGATGCTCGGTTTCATGAAGACTCTGCTCAATAG 438 46.12 MDNIIDAMNNAYQELINAVANTLEAKEASGGQVTAATDAALENLKQRWELFRVACDQAEEFVESLKLRIGSECLVDEATGSVAGKPGQAVTPGLPPISAVRLEQMSKAVRLLVIELQGSGSAGNLSVPQHSPAPFDARFHEDSAQ 145
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glco3g00365 145 Coils Coil 5 25 - -
Glco3g00365 145 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 32 1 145 IPR033244 GO:0006355(InterPro)|GO:0009631(InterPro)|GO:0010150(InterPro)|GO:0016592(InterPro)|GO:0048364(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Glco3g00365 K27471 mediator of RNA polymerase II transcription subunit 32
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Glco Glco-Chr3:20040176 Glco8g04555 Glco-Chr8:406195988 dispersed