Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glco3g00392 | ATGTTATTTAGTTTCACACCATTTAAAGGCATGAAAACAAAAATCGTTCCATACTATATGAACGGAAATCCATCTAGTCTTTTTTGTATCCTGCCACGAGATGATTCTTCACGCTTTTATCCTCCCGGCAGTACTCCTGTTTACCTTAACGTGTACGATATATCCACCATCAACTCTTGTATATCATGGACAGGGATTGGTGCCTTTCACACGGGTGTAGAAGTCCATGGTGTGGAATATGGTTTCGGATGTCACCAAGAATCGGAAAGTGGGGTCTTTGAGATTCAGCCTAAAAAATGCCCCGGATTTAAGTTTAGGGAGTCGATTTTAATGGGTACCACTAACTTAACCCAAGACCAAGTTCACAGATTCATTGAGCTTCAATCTGATAACTACTATGGTGATACATACCACTTATTTGCGAAGAATTGCAATCATTTTTGTGAAGATATGTGTTACAAATTAACCGGGAACAAAATTCCCAATTGGGTCAACCGTCTAGCCAGAATAGGTTCATGTTGTCGTTGCATACTCCCAATTGCCATAAAGGGTTCTGCTGCTAGAAATGAATCAAACTCTCAAGACTATGAAAAGAAGAGTTTAAGAAGCTCGTTTAGTTGTTTCGGGTCATTTTCATCTCATAATAAGTTGAGGAAAGTGTCAATATCGTCATTGTGTAGACATTCACTATACAAAGGATGTCTTCCCCCATGGGAGTTGGAAGTACACTCGCAAAGGCTATGTAGCGATGAGGATAAGTAA | 762 | 39.63 | MLFSFTPFKGMKTKIVPYYMNGNPSSLFCILPRDDSSRFYPPGSTPVYLNVYDISTINSCISWTGIGAFHTGVEVHGVEYGFGCHQESESGVFEIQPKKCPGFKFRESILMGTTNLTQDQVHRFIELQSDNYYGDTYHLFAKNCNHFCEDMCYKLTGNKIPNWVNRLARIGSCCRCILPIAIKGSAARNESNSQDYEKKSLRSSFSCFGSFSSHNKLRKVSISSLCRHSLYKGCLPPWELEVHSQRLCSDEDK | 253 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glco3g00392 | 253 | PANTHER | DESUMOYLATING ISOPEPTIDASE | 43 | 202 | IPR008580 | GO:0008233(InterPro)|GO:0016579(PANTHER)|GO:0070646(PANTHER)|GO:0101005(PANTHER) | |
| Glco3g00392 | 253 | ProSiteProfiles | PPPDE domain profile. | 45 | 182 | IPR008580 | GO:0008233(InterPro) | |
| Glco3g00392 | 253 | SMART | DUF862-2a | 45 | 183 | IPR008580 | GO:0008233(InterPro) | |
| Glco3g00392 | 253 | Pfam | PPPDE putative peptidase domain | 46 | 180 | IPR008580 | GO:0008233(InterPro) | |
| Glco3g00392 | 253 | Gene3D | PPPDE domains | 40 | 199 | IPR042266 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Glco3g00392 | K22763 | deubiquitinase DESI2 [EC:3.4.19.12] |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Glco | Glco-Chr3:21206701 | Glco4g05032 | Glco-Chr4:482628493 | dispersed | |
| Glco | Glco-Chr3:21206701 | Glco6g02210 | Glco-Chr6:138673857 | transposed |