AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glco3g00392 ATGTTATTTAGTTTCACACCATTTAAAGGCATGAAAACAAAAATCGTTCCATACTATATGAACGGAAATCCATCTAGTCTTTTTTGTATCCTGCCACGAGATGATTCTTCACGCTTTTATCCTCCCGGCAGTACTCCTGTTTACCTTAACGTGTACGATATATCCACCATCAACTCTTGTATATCATGGACAGGGATTGGTGCCTTTCACACGGGTGTAGAAGTCCATGGTGTGGAATATGGTTTCGGATGTCACCAAGAATCGGAAAGTGGGGTCTTTGAGATTCAGCCTAAAAAATGCCCCGGATTTAAGTTTAGGGAGTCGATTTTAATGGGTACCACTAACTTAACCCAAGACCAAGTTCACAGATTCATTGAGCTTCAATCTGATAACTACTATGGTGATACATACCACTTATTTGCGAAGAATTGCAATCATTTTTGTGAAGATATGTGTTACAAATTAACCGGGAACAAAATTCCCAATTGGGTCAACCGTCTAGCCAGAATAGGTTCATGTTGTCGTTGCATACTCCCAATTGCCATAAAGGGTTCTGCTGCTAGAAATGAATCAAACTCTCAAGACTATGAAAAGAAGAGTTTAAGAAGCTCGTTTAGTTGTTTCGGGTCATTTTCATCTCATAATAAGTTGAGGAAAGTGTCAATATCGTCATTGTGTAGACATTCACTATACAAAGGATGTCTTCCCCCATGGGAGTTGGAAGTACACTCGCAAAGGCTATGTAGCGATGAGGATAAGTAA 762 39.63 MLFSFTPFKGMKTKIVPYYMNGNPSSLFCILPRDDSSRFYPPGSTPVYLNVYDISTINSCISWTGIGAFHTGVEVHGVEYGFGCHQESESGVFEIQPKKCPGFKFRESILMGTTNLTQDQVHRFIELQSDNYYGDTYHLFAKNCNHFCEDMCYKLTGNKIPNWVNRLARIGSCCRCILPIAIKGSAARNESNSQDYEKKSLRSSFSCFGSFSSHNKLRKVSISSLCRHSLYKGCLPPWELEVHSQRLCSDEDK 253
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glco3g00392 253 PANTHER DESUMOYLATING ISOPEPTIDASE 43 202 IPR008580 GO:0008233(InterPro)|GO:0016579(PANTHER)|GO:0070646(PANTHER)|GO:0101005(PANTHER)
Glco3g00392 253 ProSiteProfiles PPPDE domain profile. 45 182 IPR008580 GO:0008233(InterPro)
Glco3g00392 253 SMART DUF862-2a 45 183 IPR008580 GO:0008233(InterPro)
Glco3g00392 253 Pfam PPPDE putative peptidase domain 46 180 IPR008580 GO:0008233(InterPro)
Glco3g00392 253 Gene3D PPPDE domains 40 199 IPR042266 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Glco3g00392 K22763 deubiquitinase DESI2 [EC:3.4.19.12]
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Glco Glco-Chr3:21206701 Glco4g05032 Glco-Chr4:482628493 dispersed
Glco Glco-Chr3:21206701 Glco6g02210 Glco-Chr6:138673857 transposed