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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glco3g00406 ATGGGTGATGAAGCTGAAGGCAAGAGAACCACAATTGGTGTGGGTCCCACCTCTGTTTTGGAATACCTGGACCCCAATTACTGGAATGATAGGTTCACTTCTGAGGATCATTACGAATGGCTTAAAGATTACTCCCATTTTCGTCATCTCATACAGCAACATATCAAAGCTGCATCTTCTGTGTTGGAGCTCGGGTGTGGGAACTCACAACTGTGTGACGAGCTATATAAAGAAGGAATAACTGATCTAACCTCTATTGATATATCTTCAGTTGCAGTTGCCAAAATGCAGAAACGACTGTTATCAAAAGGCCTTAATGATATTAAAGTTATGGAAGGCGACATGCTGAATCTTTCCTTTACTGATGAGTCGTTTGATGTTGTTATAGAGAAAGGAACTATGGATGTTTTGTTCGTCGACAGTGGTGACCCTTGGAACCCACGCCCAGAGGCTGTTAACAATGCAACGGCAATGCTTCAAGGTGTTCATAGGGTTTTAAAACCTAACGGCATTTTCATCTCAATCGCTTTTGGTCAGCCACACTTCAGGCGCCCGTTATTTAATGCTCCTGAATTTACGTGGTCAATCGAGTATTCTACATTTGGTGATGGATTCCACTATTTCTTTTATATCTTGAGGAAGGGATGCAGATCTCTAGACTCCGATGCAGATATGAATAAGGTCGAGACACCATCTTTATGCCTTTATCAAGATGAATTAGATAACGAAGATTACTTATTTCGCACCAACATTGACGAGATGAATGATGAAAGATAG 777 41.18 MGDEAEGKRTTIGVGPTSVLEYLDPNYWNDRFTSEDHYEWLKDYSHFRHLIQQHIKAASSVLELGCGNSQLCDELYKEGITDLTSIDISSVAVAKMQKRLLSKGLNDIKVMEGDMLNLSFTDESFDVVIEKGTMDVLFVDSGDPWNPRPEAVNNATAMLQGVHRVLKPNGIFISIAFGQPHFRRPLFNAPEFTWSIEYSTFGDGFHYFFYILRKGCRSLDSDADMNKVETPSLCLYQDELDNEDYLFRTNIDEMNDER 258
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glco3g00406 258 CDD AdoMet-MTases 61 177 - -
Glco3g00406 258 PANTHER SAM-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN 15 215 IPR051419 -
Glco3g00406 258 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 26 210 IPR029063 -
Glco3g00406 258 Pfam Methyltransferase domain 56 176 IPR025714 -
Glco3g00406 258 FunFam EEF1A lysine methyltransferase 4 20 231 - -
Glco3g00406 258 Gene3D Vaccinia Virus protein VP39 20 229 IPR029063 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Glco3g00406 K22857 EEF1A lysine methyltransferase 4 [EC:2.1.1.-]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Glco Glco-Chr1:94667225 Glco3g00406 Glco-Chr3:21892743 dispersed
Glco Glco-Chr3:21892743 Glco5g04401 Glco-Chr5:405141241 dispersed