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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glco3g00789 ATGAAATTCAGCAACCACAGCCAACAGGAGCATGACACGTGTATTGAGGAAATAGTGAAGTCAGTAACAAGTGAGAATTGTAATGGTGGTGAGGAAGAAGTGTATTATACGCCTCCATTGAATTTCTCAATGGTTGATAATGGAATCTATCGTTCTGGCTTTCCTGATACCATCAATTTCCCCTTTCTTAAAACCCTTGGCTTACGCTCTATTGTATATTTGTGTCCCGAACCGTATCCGGAGCATAACATGGAGTTTTTGAAAGCTAATGGAATCCAGTTATTTCAGTTTGGAATCGAAGGAACTAAGGAACCTTTTGTCAATATTCCTGAGGACAGAATTCGAGAAGCGTTAAAAGTTGTTCTGGATGTTAAAAATCAACCCTTGTTGATTCATTGCAAAAGAGGCAAGCACCGAACGGGTTGTCTTGTGGGATGCATGAGAAAAATTCAAAGATGGTGCCTGACGTCTATTTTTGACGAGTACCAAAGATTTGCAGCTGCTAAGGCTAGAATTTCAGATCAGAGGTTTATGGAGGTGTTTGATGCTTCTGGATTCAAAGATATACCACCGTGTCCATGTAATTGTTCTAAGAGGTAA 600 40.0 MKFSNHSQQEHDTCIEEIVKSVTSENCNGGEEEVYYTPPLNFSMVDNGIYRSGFPDTINFPFLKTLGLRSIVYLCPEPYPEHNMEFLKANGIQLFQFGIEGTKEPFVNIPEDRIREALKVVLDVKNQPLLIHCKRGKHRTGCLVGCMRKIQRWCLTSIFDEYQRFAAAKARISDQRFMEVFDASGFKDIPPCPCNCSKR 199
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glco3g00789 199 ProSitePatterns Tyrosine specific protein phosphatases active site. 131 141 IPR016130 GO:0016311(InterPro)
Glco3g00789 199 FunFam probable tyrosine-protein phosphatase At1g05000 35 185 - -
Glco3g00789 199 PANTHER TYROSINE-PROTEIN PHOSPHATASE 23 190 - GO:0005737(PANTHER)|GO:0016791(PANTHER)
Glco3g00789 199 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 36 181 IPR029021 -
Glco3g00789 199 Pfam Tyrosine phosphatase family 38 187 IPR004861 -
Glco3g00789 199 CDD PFA-DSP-Siw14 38 182 - -
Glco3g00789 199 Gene3D Protein tyrosine phosphatase superfamily 36 185 IPR029021 -
Glco3g00789 199 PRINTS Plant and fungal dual specificity phosphatase signature 92 106 IPR020428 GO:0016791(InterPro)
Glco3g00789 199 PRINTS Plant and fungal dual specificity phosphatase signature 36 53 IPR020428 GO:0016791(InterPro)
Glco3g00789 199 PRINTS Plant and fungal dual specificity phosphatase signature 73 86 IPR020428 GO:0016791(InterPro)
Glco3g00789 199 PRINTS Plant and fungal dual specificity phosphatase signature 109 123 IPR020428 GO:0016791(InterPro)
Glco3g00789 199 ProSiteProfiles Dual specificity protein phosphatase domain profile. 41 192 IPR020422 GO:0006470(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Glco3g00789 K18045 tyrosine-protein phosphatase SIW14 [EC:3.1.3.48]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Glco Glco-Chr3:46638516 Glco7g06616 Glco-Chr7:567876203 dispersed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Glco1g02859 . 72 483 Protein tyrosine phosphatase (PTP) family AT3G55270 56.028 5.50e-164 489.0
Glco1g06711 . 16 166 Protein tyrosine phosphatase (PTP) family AT2G35320 53.595 1.64e-59 185.0
Glco2g01064 . 9 191 Protein tyrosine phosphatase (PTP) family AT3G02800 62.295 1.50e-86 253.0
Glco2g03765 . 44 187 Protein tyrosine phosphatase (PTP) family AT5G23720 64.138 1.50e-54 181.0
Glco2g04845 . 155 282 Protein tyrosine phosphatase (PTP) family AT3G10940 79.688 6.76e-74 219.0
Glco2g06287 . 15 912 Protein tyrosine phosphatase (PTP) family AT5G23720 63.344 0.0 1102.0
Glco3g00577 . 41 611 Protein tyrosine phosphatase (PTP) family AT3G19420 69.686 0.0 811.0
Glco3g00789 . 49 207 Protein tyrosine phosphatase (PTP) family AT1G05000 79.245 1.06e-97 280.0
Glco3g01044 . 931 977 Protein tyrosine phosphatase (PTP) family AT5G58160 68.085 4.53e-16 68.9
Glco3g02733 . 9 657 Protein tyrosine phosphatase (PTP) family AT5G01290 65.106 0.0 845.0
Glco3g03201 ACH 1 375 Protein tyrosine phosphatase (PTP) family AT5G58160 50.656 4.57e-126 407.0
Glco3g04472 . 15 327 Protein tyrosine phosphatase (PTP) family AT2G35680 52.396 2.77e-102 300.0
Glco3g04536 . 32 207 Protein tyrosine phosphatase (PTP) family AT5G56610 75.0 1.89e-98 286.0
Glco3g04733 . 312 459 Protein tyrosine phosphatase (PTP) family AT3G09100 53.691 9.93e-50 164.0
Glco3g07426 . 43 210 Protein tyrosine phosphatase (PTP) family AT1G05000 62.353 9.67e-74 220.0
Glco4g00783 . 76 159 Protein tyrosine phosphatase (PTP) family AT3G01510 28.571 6.97e-07 48.9
Glco4g03902 . 16 307 Protein tyrosine phosphatase (PTP) family AT2G35320 54.902 4.35e-122 350.0
Glco4g04993 . 68 358 Protein tyrosine phosphatase (PTP) family AT3G09100 44.595 3.33e-77 243.0
Glco4g06020 . 459 541 Protein tyrosine phosphatase (PTP) family AT3G01510 32.941 3.38e-06 47.8
Glco5g00156 . 451 550 Protein tyrosine phosphatase (PTP) family AT3G01510 30.392 7.31e-07 49.7
Glco5g02822 . 1 337 Protein tyrosine phosphatase (PTP) family AT2G35680 53.757 1.90e-114 332.0
Glco5g07472 . 18 239 Protein tyrosine phosphatase (PTP) family AT3G44620 59.91 2.04e-91 267.0
Glco6g03307 . 13 840 Protein tyrosine phosphatase (PTP) family AT3G10550 64.042 0.0 1104.0
Glco6g03497 . 57 192 Protein tyrosine phosphatase (PTP) family AT3G09100 52.206 1.19e-41 150.0
Glco6g05491 . 1 653 Protein tyrosine phosphatase (PTP) family AT5G01290 53.148 0.0 683.0
Glco6g06550 . 47 540 Protein tyrosine phosphatase (PTP) family AT5G01290 53.438 1.26e-177 514.0
Glco7g01325 . 59 611 Protein tyrosine phosphatase (PTP) family AT3G19420 61.16 0.0 715.0
Glco7g01648 . 1 395 Protein tyrosine phosphatase (PTP) family AT5G39400 55.779 1.59e-159 453.0
Glco7g03403 . 464 538 Protein tyrosine phosphatase (PTP) family AT3G01510 37.333 1.37e-06 48.5
Glco7g05375 ACH 1 783 Protein tyrosine phosphatase (PTP) family AT3G55270 46.509 0.0 659.0
Glco7g06616 . 1 203 Protein tyrosine phosphatase (PTP) family AT1G05000 60.591 1.99e-83 244.0
Glco8g00293 ACH 1 784 Protein tyrosine phosphatase (PTP) family AT3G55270 49.558 0.0 684.0
Glco8g00605 . 50 148 Protein tyrosine phosphatase (PTP) family AT3G19420 41.414 9.95e-12 60.5
Glco8g01373 . 1 378 Protein tyrosine phosphatase (PTP) family AT3G52180 57.068 1.95e-149 425.0
Glco8g01392 . 20 840 Protein tyrosine phosphatase (PTP) family AT3G10550 61.178 0.0 1034.0
Glco8g02246 . 62 590 Protein tyrosine phosphatase (PTP) family AT3G01510 72.556 0.0 800.0
Glco9g00529 . 60 207 Protein tyrosine phosphatase (PTP) family AT5G56610 77.027 2.87e-84 248.0
Glco9g00978 . 1013 1097 Protein tyrosine phosphatase (PTP) family AT5G58160 57.647 1.50e-26 101.0
Glco9g01328 . 8 201 Protein tyrosine phosphatase (PTP) family AT3G02800 64.433 1.72e-91 265.0
Glco9g02704 . 3 335 Protein tyrosine phosphatase (PTP) family AT1G71860 61.424 1.15e-145 412.0
Glco9g03725 . 1 257 Protein tyrosine phosphatase (PTP) family AT2G04550 55.477 5.02e-101 294.0
Glco9g04472 . 32 190 Protein tyrosine phosphatase (PTP) family AT3G23610 57.233 7.10e-57 187.0
Glco9g04473 . 21 189 Protein tyrosine phosphatase (PTP) family AT3G23610 58.58 5.75e-72 214.0
Glco9g05336 ACH 949 1281 Protein tyrosine phosphatase (PTP) family AT5G58160 61.862 2.21e-134 411.0
Glco10000322.1g00134 . 46 282 Protein tyrosine phosphatase (PTP) family AT3G10940 75.833 6.08e-140 394.0
Glco10001067.1g00004 . 451 534 Protein tyrosine phosphatase (PTP) family AT3G01510 33.333 4.82e-06 45.8
Glco10001434.1g00001 . 59 186 Protein tyrosine phosphatase (PTP) family AT3G23610 33.835 1.05e-16 75.9
Glco10002083.1g00001 . 42 190 Protein tyrosine phosphatase (PTP) family AT1G05000 44.295 3.72e-42 147.0
Glco10002155.1g00002 . 1 378 Protein tyrosine phosphatase (PTP) family AT3G52180 59.326 3.33e-155 440.0