AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glco3g00842 ATGATGCAGTTGTTGATGACAACAACAACAAACCCATCATTCACATACCCACCACCAATTCACCAATCCAAACACCACCCGATGTTGTTCCCTCTCAAAACCCCATCAAAACCCACCACCCACCCCATAAAAGCCCAAAAAAACTCAGGAGGGTTTTTATCAGCAATTGGTAATGCAATTGAAGAGCAAGAGTATAGGAAATCTAGAGCTGAAGTTATTAGGAAAGGGACTGGTTTAGATGGTTATAATATTGAAGGGATTTCAATTGGTGGTCATGAGACTTGTGTTATTATTCCTGAGTTGAAATGTGCTTTCGATATCGGGCGGTGTCCTGCGCGAGCTGTGGCCATGAATTTCTTGTTTATTACTCACGGTCATCTTGATCATATTGGTGGGCTACCTATGTATATTGCGACTCGTGGCTTATACAGCATGACTCCACCAACTGTATTTGTACCTCCTTCCATCAAAGAAGATGTTGAAAACTTGATTGACGTTCACAGGAAGATGGGTCAAGTGGAGTTGAATGTTGATTTGGTTGCATTGGATATAGGAGAAACGTATGAGCTCAGAAACGACCTTGTTGTACGTCCATTTAAAACTCACCATGTCATACCAAGTCAGGGTTATGTTATTTACTCTGTTCGTAAGAAGCTCAAGAAGCAGTACATTCATTTAAAGGGAAGGGAGATTGAGAAAAAGAAGAAATCTGGAGTCGAGATAACGGATATCATATTGTCCCCTGAGGTGGCATTCACCGGAGATACAACTTCTGATTTTCTACTTGATCCACGAAGTTCTGATGCCTTGAGAGCTAAAGTTCTTATAACTGAGGCTACCTTTTTGGACGATAAATGTGACATTGAGCATGCACGAGAACATGGTCACATGCATATTGACGAGATTATAGAGAACGCCAAGTGGATCCGTAATAATGCCATTCTTTTGACCCATTTCTCCTCCCGCTACCATATTGAGGAAATTCGTCAAGCTGTGACAAAGTTACAGTTGAAGGTTTCAGCCAAAGTGGTTCCTCTTACAGAAGGTTTTAGATCAATGTACTCATCGTAA 1071 41.27 MMQLLMTTTTNPSFTYPPPIHQSKHHPMLFPLKTPSKPTTHPIKAQKNSGGFLSAIGNAIEEQEYRKSRAEVIRKGTGLDGYNIEGISIGGHETCVIIPELKCAFDIGRCPARAVAMNFLFITHGHLDHIGGLPMYIATRGLYSMTPPTVFVPPSIKEDVENLIDVHRKMGQVELNVDLVALDIGETYELRNDLVVRPFKTHHVIPSQGYVIYSVRKKLKKQYIHLKGREIEKKKKSGVEITDIILSPEVAFTGDTTSDFLLDPRSSDALRAKVLITEATFLDDKCDIEHAREHGHMHIDEIIENAKWIRNNAILLTHFSSRYHIEEIRQAVTKLQLKVSAKVVPLTEGFRSMYSS 356
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glco3g00842 356 CDD RNaseZ-MBL-fold 81 279 - -
Glco3g00842 356 Gene3D - 82 349 IPR036866 -
Glco3g00842 356 PANTHER TRNASE Z TRZ1 40 350 - -
Glco3g00842 356 SUPERFAMILY Metallo-hydrolase-oxidoreductase 116 331 IPR036866 -
Glco3g00842 356 Pfam Beta-lactamase superfamily domain 116 319 IPR001279 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Glco3g00842 K00784 ribonuclease Z [EC:3.1.26.11]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Glco Glco-Chr2:625684034 Glco3g00842 Glco-Chr3:48645227 dispersed