AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glco3g00852 | ATGGGCATCACTGGAGAACTAGTTAGAAGTGTGTTCTCGAAAAATAGATCTTTCGGAACCACCCACGACACGAATGTGATGAGAAACAATGCAGTTGAAAGAAAGAGATGGACTTCTGTGAGATCATATCTTTGTGGCGATGAATTTAATTCTGTTTTAGCCGAAGAAGATTTCGCTTCTAGAAGAAGTGATAAAACAGCTCTGAGTTCGGTTTTTCTTGAGAATTATTCTGGTTCTACTAGAACATCAAAGGCTACTATTTTCAGTTCACGAATTGATGAAGATTCGTCATCTATCAAGGGTTCAGAAGCCAGTGTCACACAGCATCTAGAACACGAAGAAACTACTACTTTCAGCTTGGAACATAATGCTGCAGTTGTTATTCAGACAGCATTTAGAAGTTTTATGGCAAGGAGTCAAATTGAAATACCTGAACCTGTGGATGTTGGTGATCATGATCAAGAGTCGATAGCAACATCAATAGAAGTGCAAACTGGAAACTCGGTGGTGGAAGCTAAAGACGTTGGCGAAAGTTTCACTCATCGTGTGCAGCAGCATCACAAGGGTACTAGAGCACAAACGTTAAAGCTAAAGGAGGACTGGGACGATAGCACCCTGAGTAGCAACATGTCGAAAATGAGGATTCAACATAGACTAGAGGCATCTACTAGACGTGAAAGAGCACTCGCCTATGCTTTCTCACAACAGTTAAGGATATGCTCGAAGAAGAAACAAAATATGAGATCCGGGAACGATTCAGAAGCAAACATGAGTTGGAGTTGGCTTGAGAGATGGATGGCGACCCGACAACACGACACTTCATTTGGGGACATAAGTAAACAGTTTGAACAATTAAATGTGAATGAAAAACTAATGGTTCAAACTAGAGTTTTGTCGGATTTAGCAGGGGAAGAGAAGGAAAGTTGTGGATCAAATGAAGTTTCTATGCATTTTGATAATGTTTCTTTGAGCTCAAAATCAGGCAAAAATTCTTACTATAAACCCACTCGAAACAGACTCAAAGCTACAAGTGTCTCGAGGCGAAAAACATTACCAGGCTATGGTTTCACCAAGGAGTATTCTAAGGTGAACAAGCAAGGAGGACACAAGGAGATTGGAAGTGAAGATCAACAATGA | 1137 | 40.55 | MGITGELVRSVFSKNRSFGTTHDTNVMRNNAVERKRWTSVRSYLCGDEFNSVLAEEDFASRRSDKTALSSVFLENYSGSTRTSKATIFSSRIDEDSSSIKGSEASVTQHLEHEETTTFSLEHNAAVVIQTAFRSFMARSQIEIPEPVDVGDHDQESIATSIEVQTGNSVVEAKDVGESFTHRVQQHHKGTRAQTLKLKEDWDDSTLSSNMSKMRIQHRLEASTRRERALAYAFSQQLRICSKKKQNMRSGNDSEANMSWSWLERWMATRQHDTSFGDISKQFEQLNVNEKLMVQTRVLSDLAGEEKESCGSNEVSMHFDNVSLSSKSGKNSYYKPTRNRLKATSVSRRKTLPGYGFTKEYSKVNKQGGHKEIGSEDQQ | 378 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glco3g00852 | 378 | MobiDBLite | consensus disorder prediction | 326 | 340 | - | - | |
| Glco3g00852 | 378 | ProSiteProfiles | IQ motif profile. | 121 | 150 | - | - | |
| Glco3g00852 | 378 | MobiDBLite | consensus disorder prediction | 326 | 378 | - | - | |
| Glco3g00852 | 378 | PANTHER | IQ-DOMAIN 5-RELATED | 182 | 336 | - | - | |
| Glco3g00852 | 378 | MobiDBLite | consensus disorder prediction | 363 | 378 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Glco3g00852 | - | - |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Glco | Glco-Chr3:49065470 | Glco7g05584 | Glco-Chr7:528671731 | dispersed |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Glco1g00700 | . | 11 | 534 | IQD Protein family | AT4G00820 | 43.009 | 1.37e-110 | 337.0 | |
| Glco1g07205 | . | 1 | 382 | IQD Protein family | AT4G14750 | 44.175 | 6.45e-82 | 253.0 | |
| Glco2g02181 | ACH | 1 | 271 | IQD Protein family | AT3G52290 | 41.259 | 4.70e-52 | 177.0 | |
| Glco2g02919 | . | 5 | 100 | IQD Protein family | AT3G51380 | 50.769 | 1.94e-30 | 104.0 | |
| Glco2g03381 | ACH | 1 | 575 | IQD Protein family | AT1G74690 | 38.632 | 1.02e-79 | 259.0 | |
| Glco2g05693 | . | 1 | 563 | IQD Protein family | AT1G18840 | 36.14 | 2.58e-71 | 235.0 | |
| Glco2g06734 | . | 1 | 414 | IQD Protein family | AT1G72670 | 41.907 | 7.77e-87 | 268.0 | |
| Glco2g06907 | ACH | 1 | 353 | IQD Protein family | AT3G16490 | 50.382 | 3.68e-85 | 262.0 | |
| Glco2g07349 | . | 109 | 330 | IQD Protein family | AT3G16490 | 36.364 | 2.48e-23 | 97.8 | |
| Glco3g00852 | . | 1 | 401 | IQD Protein family | AT5G35670 | 41.429 | 2.17e-77 | 243.0 | |
| Glco3g01322 | . | 171 | 305 | IQD Protein family | AT4G00820 | 45.985 | 7.44e-31 | 112.0 | |
| Glco3g03118 | . | 1 | 374 | IQD Protein family | AT4G14750 | 48.259 | 3.29e-89 | 272.0 | |
| Glco3g04183 | . | 1 | 155 | IQD Protein family | AT5G03960 | 42.308 | 6.61e-17 | 79.0 | |
| Glco3g04497 | . | 1 | 353 | IQD Protein family | AT3G16490 | 47.425 | 1.53e-62 | 203.0 | |
| Glco3g06112 | . | 11 | 534 | IQD Protein family | AT4G00820 | 53.369 | 2.08e-156 | 455.0 | |
| Glco4g00037 | . | 73 | 516 | IQD Protein family | AT3G59690 | 42.038 | 1.50e-88 | 282.0 | |
| Glco4g02190 | ACH | 1 | 450 | IQD Protein family | AT5G03040 | 47.38 | 3.28e-112 | 334.0 | |
| Glco4g03470 | . | 169 | 481 | IQD Protein family | AT4G23060 | 39.82 | 2.17e-56 | 191.0 | |
| Glco4g04297 | . | 1 | 413 | IQD Protein family | AT2G26180 | 56.629 | 2.67e-139 | 404.0 | |
| Glco5g01879 | . | 1 | 482 | IQD Protein family | AT4G23060 | 38.323 | 5.07e-60 | 201.0 | |
| Glco5g02587 | . | 1 | 379 | IQD Protein family | AT3G22190 | 57.254 | 2.74e-118 | 348.0 | |
| Glco5g04303 | . | 1 | 445 | IQD Protein family | AT3G49260 | 48.786 | 5.42e-96 | 295.0 | |
| Glco5g05873 | ACH | 1 | 450 | IQD Protein family | AT5G03040 | 51.327 | 1.68e-133 | 389.0 | |
| Glco5g05881 | . | 348 | 450 | IQD Protein family | AT5G03040 | 54.369 | 8.31e-25 | 95.1 | |
| Glco6g02702 | . | 1 | 374 | IQD Protein family | AT4G14750 | 33.094 | 5.92e-38 | 138.0 | |
| Glco7g01762 | ACH | 1 | 554 | IQD Protein family | AT1G74690 | 40.559 | 5.96e-84 | 271.0 | |
| Glco7g03032 | . | 1 | 102 | IQD Protein family | AT1G72670 | 56.19 | 1.79e-24 | 93.6 | |
| Glco7g04684 | ACH | 11 | 360 | IQD Protein family | AT5G07240 | 40.759 | 2.49e-39 | 142.0 | |
| Glco7g05584 | ACH | 1 | 379 | IQD Protein family | AT5G03040 | 42.721 | 6.65e-85 | 267.0 | |
| Glco7g06897 | . | 242 | 443 | IQD Protein family | AT5G13460 | 42.233 | 2.39e-34 | 124.0 | |
| Glco8g00192 | ACH | 1 | 421 | IQD Protein family | AT3G52290 | 50.78 | 1.05e-113 | 338.0 | |
| Glco8g00903 | ACH | 108 | 342 | IQD Protein family | AT5G07240 | 46.825 | 2.83e-45 | 157.0 | |
| Glco8g01260 | . | 11 | 534 | IQD Protein family | AT4G00820 | 34.709 | 9.62e-56 | 192.0 | |
| Glco8g02141 | ACH | 1 | 575 | IQD Protein family | AT1G74690 | 38.748 | 1.52e-81 | 264.0 | |
| Glco8g03037 | ACH | 1 | 450 | IQD Protein family | AT5G03040 | 54.565 | 8.48e-147 | 425.0 | |
| Glco8g03731 | . | 214 | 293 | IQD Protein family | AT3G59690 | 47.872 | 2.72e-14 | 65.5 | |
| Glco8g05576 | . | 1 | 443 | IQD Protein family | AT5G13460 | 42.952 | 2.56e-95 | 290.0 | |
| Glco8g06007 | . | 217 | 310 | IQD Protein family | AT3G59690 | 55.046 | 2.98e-32 | 116.0 | |
| Glco9g01143 | . | 214 | 794 | IQD Protein family | AT1G19870 | 34.604 | 9.26e-77 | 260.0 | |
| Glco9g03909 | . | 61 | 237 | IQD Protein family | AT3G15050 | 53.672 | 6.36e-65 | 200.0 | |
| Glco9g04247 | ACH | 1 | 353 | IQD Protein family | AT3G16490 | 53.133 | 3.03e-101 | 304.0 | |
| Glco10000199.1g00007 | . | 1 | 237 | IQD Protein family | AT3G15050 | 46.774 | 1.11e-63 | 199.0 | |
| Glco10000432.1g00003 | . | 1 | 794 | IQD Protein family | AT1G19870 | 36.213 | 4.90e-113 | 361.0 | |
| Glco10000685.1g00024 | . | 1 | 517 | IQD Protein family | AT3G59690 | 47.803 | 1.24e-147 | 432.0 | |
| Glco10001331.1g00001 | . | 2 | 247 | IQD Protein family | AT3G15050 | 44.195 | 2.67e-69 | 213.0 |