AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Glco3g00864 | ATGGCGGGCGAAGAGAACAAGGAACTAGGCAAAGAAAGTATTAAAAAAAGTGGGAGTGAATCTTCATTTTGTGAAAGTGAGAATGAAGGAGATGAAGTTGAAGATACTAAAATTGAATTGGGTCCTCAATGCACCCTTAAAGATCAACTTGACAAGGACAAGGATGATGAGAGTCTCAGAAAGTGGAAAGAACAACTACTTGGGAACGTTGATATTAATGATGTTGGAGAATCATTAGAACCAGAAGTAAAGATCCTCAGTCTTTCAATACTGTCCCCAGGAAGATCCGACATTGTTCTTGCAATACCCGCAGATGGAAAACCTAAAGGCTCATGGTTTACACTGAAAGAAGGTTCTCGTTACAGCCTCCGGTTCTCCTTTCAAGTTAAACATAACATTGTTTCTGGTTTAAAGTACACCAACAATGTATGGAAAACTGGTGTCAAGGTGGATAACACAAAACAAATGCTCGGTACGTATAGTCCACAGCAAGAAGCATACACTTATGATATGCCTGAGGAGACTACACCTTCTGGTTACTTTGCAAGAGGATCTTACTCTGCTAAAACGAAGTTTGTTGATGATGACAACAAATGCTACTTAGAGATTTGTTATACCTTTGATATCCGAAAAGAATGGGCGAGTGCTGAAAAAGCATAA | 660 | 39.24 | MAGEENKELGKESIKKSGSESSFCESENEGDEVEDTKIELGPQCTLKDQLDKDKDDESLRKWKEQLLGNVDINDVGESLEPEVKILSLSILSPGRSDIVLAIPADGKPKGSWFTLKEGSRYSLRFSFQVKHNIVSGLKYTNNVWKTGVKVDNTKQMLGTYSPQQEAYTYDMPEETTPSGYFARGSYSAKTKFVDDDNKCYLEICYTFDIRKEWASAEKA | 219 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Glco3g00864 | 219 | SUPERFAMILY | E set domains | 26 | 213 | IPR014756 | - | |
| Glco3g00864 | 219 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
| Glco3g00864 | 219 | FunFam | Rho GDP-dissociation inhibitor 1 | 36 | 215 | - | - | |
| Glco3g00864 | 219 | Pfam | RHO protein GDP dissociation inhibitor | 26 | 212 | IPR000406 | GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro) | |
| Glco3g00864 | 219 | PANTHER | RHO GDP-DISSOCIATION INHIBITOR | 19 | 213 | IPR000406 | GO:0005094(InterPro)|GO:0005094(PANTHER)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0005829(PANTHER)|GO:0007266(InterPro)|GO:0007266(PANTHER)|GO:0016020(PANTHER) | |
| Glco3g00864 | 219 | Gene3D | Coagulation Factor XIII, subunit A, domain 1 | 35 | 215 | IPR024792 | - | |
| Glco3g00864 | 219 | PRINTS | RHO protein GDP dissociation inhibitor signature | 133 | 149 | IPR000406 | GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro) | |
| Glco3g00864 | 219 | PRINTS | RHO protein GDP dissociation inhibitor signature | 166 | 178 | IPR000406 | GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro) | |
| Glco3g00864 | 219 | PRINTS | RHO protein GDP dissociation inhibitor signature | 150 | 165 | IPR000406 | GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro) | |
| Glco3g00864 | 219 | PRINTS | RHO protein GDP dissociation inhibitor signature | 192 | 209 | IPR000406 | GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro) | |
| Glco3g00864 | 219 | MobiDBLite | consensus disorder prediction | 1 | 40 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Glco3g00864 | K12462 | Rho GDP-dissociation inhibitor |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Glco | Glco-Chr3:49778359 | Glco8g04157 | Glco-Chr8:325181999 | dispersed | |
| Glco | Glco-Chr3:541695622 | Glco3g00864 | Glco-Chr3:49778359 | transposed | |
| Glco | Glco-Chr6:48551381 | Glco3g00864 | Glco-Chr3:49778359 | transposed | |
| Glco | Glco-Chr7:591344021 | Glco3g00864 | Glco-Chr3:49778359 | transposed | |
| Glco | Glco-Chr3:124946401 | Glco3g00864 | Glco-Chr3:49778359 | transposed | |
| Glco | Glco-Chr3:49778359 | Glco7g06648 | Glco-Chr7:568878319 | wgd |