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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glco3g00877 ATGCAGTCTAGTGGTGAAGTTGGATCACTGGCTGTAGATTACTTTACGTTTTCCCCAAGCATTGTAAGCTATATGAAATCAGCATCTCTTGTCATAAGCCACGCAGGTTCAGGGAGCATATTTGAGACACTAAAACTGGTCAAACCTTTAATAGTTGTCGTTAATGAAGATTTGATGGATAACCATCAGAGTGAGCTCGCCGAAGAATTAGCAGAAATAAAACATTTATTTTGTGCTCGCCCTCAAACTCTTTACCAAGTTATTCAAGCTCTCGATTTGGATTCTATTGCTCCATATCAACCAGGTGACGCTACTCCAGTTGCTAAACTAATCAATAGGCACCTTGGTTTTCCTGCTGATTGA 363 40.22 MQSSGEVGSLAVDYFTFSPSIVSYMKSASLVISHAGSGSIFETLKLVKPLIVVVNEDLMDNHQSELAEELAEIKHLFCARPQTLYQVIQALDLDSIAPYQPGDATPVAKLINRHLGFPAD 120
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glco3g00877 120 PANTHER UDP-N-ACETYLGLUCOSAMINE TRANSFERASE SUBUNIT ALG13 2 119 IPR052474 GO:0006488(PANTHER)|GO:0043541(PANTHER)
Glco3g00877 120 Gene3D Glycogen Phosphorylase B; 1 115 - -
Glco3g00877 120 SUPERFAMILY UDP-Glycosyltransferase-glycogen phosphorylase 11 91 - -
Glco3g00877 120 Pfam Glycosyltransferase family 28 C-terminal domain 7 109 IPR007235 GO:0016758(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Glco3g00877 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Glco Glco-Chr3:50146680 Glco3g00877 Glco-Chr3:50318049 proximal
Glco Glco-Chr3:50318049 Glco3g00880 Glco-Chr3:50609752 proximal