AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Glco3g00905 ATGAACTCAACAACAACACTTCTCAAAACAACACCAACACCATTCATCAATCTTCCCAAAACAAGATTCTCAAACCAATCCCAACACAAAACCTTAAAAAAATCACATTTTCAACCCATTTCCCCAATCAAGATTCCAAGAAACCCCCATTTTTGCACCCTCAAAGCTTATAAAAAAAACCCATTTCATATTACCACCCAAGCTCAACAACCCACAAAGGATTTTTCAAAAAGATGTGATCTTGATAAGATTAAGGTTGTCGTTAGATTTGGGGTTGTTGTGATGGGTGTCTTGGTTTTAGGTGTGATTAGGTGTCAGAATGTTATGGCTATAATGGAGGGTGGGAGTGGTATAGTTGATGTGAAGGGGTTTTGGAATGGGCCTAAGTTTTCGCAGGTTTTGCGGGTTTTTCGTGAGCAAGGTTTGATTTTGGCTGGCCTTTTGGGCTTGTCTGCTTTCTTCTCTATGGCCGAGACTTCGATTACTACTCTTTCGCCTTGGAAGGTGAGAGAGCTGGCTGAAAAAGAAGGAGAAAATGGTGTCTTTAAGCTGCTTCGTACAGATGTAACCCGCTTCCTTACCACCATTCTAATTGGCACAACTGTGGTCAACATTGGAGCTACGGCACTTTTCACAGAGGCGGCAACAACGGTTTTTGGCGAAGCTGGAGTCAGTGCAGCAACAGGTGTTATGACGGTTGTTGTTTTACTTTTGACTGAAATTACTCCCAAAAGTATAGCTGTTCACAACGCTACTGCAGTTGCTAGGGCTGTGGTACGTCCCGTTGCATGGCTTTCAATTGTTCTGTATCCAGTTGGAAGAGTTGTTACCTTCCTTTCAATGGGAATGCTTAAAATTCTTGGCTTGAAAGCGAAAAGTGAACCATCTGTCACTGAAGATGAACTCAAGCTGATGTTGAGGGTTGCCGAGTTGAGTGGGGCCATTGAGGAAGAAGAACAGGATATGATCGAGAATGTGTTAGAGATAAAAGACACCCACGTGAAGGAGGTTATGACCCCTCTTGTAGATGTAGTCGCAGTTGATGCTAGCGCAACTATACTCGATTTCCATCACTTGTGGGTGACTCATCAATATTCTAGGGTGCCGGTATTTGAGCAGAGAATTGATAACATTGTGGGCATAGCTTATGCAATGGATTTATTGGATCTTGTCAAGAAAGGAGAGATGCTAGAAACTGCTGTGGTGGGTGAAATCGCTCACAAACCTGCCTATTTTGTTCCTGATTCAATGTTAGTTTGGAATCTTCTGAGGGAGTTCCGCATCAGGAAGGTCCACATGGCGGTAGTTCTTAATGAATATGGAGGAACCGTGGGTATTGTTACACTCGAAGATGTTGTTGAGGAAATTGTTGGTGAAATCTTTGATGAAAATGACTCGAAGGAAGAAATTGAGAGAAAAACCGGGAATATTGTAAAGCGAGCGGATGGTGTCTTTGACGTTGATGCAAATACATCAGTATACCAACTTTCAGAAGATCTCGAAATCATTTTGCCTGAGGATCATCAATACGAGACAGTATCAGGTTTTATTTGCGAAGCATTTGGATATATACCAAGAACAGGTGAAAGTATTAAAGTAGTACTAAAGAAAGCAAATAAAGAAGATGATGATAATGACGAGAATAAACAAGAAACCAACAGTCAGGATCAGAAAGATACATCTCAAACTTTCAAGCTCGGGATTCTGGCGGGAAATTGTAGAAAGGTTAATACTGTTAGATTTGAAAGGATAAACAACAATTCAGCAAAAGAAATCAAAGAAGCTGCTCGGATCGTGCCTAGGTTTTGGAAAACGAAATGGAAAAATGACGAAAGCGCAGGCAGCAGTGATGAAGAAAGATTGTATCAGGACCCACCCAAAACCGCCATCTCCCATGACCATATTTTGGCAGAAAATAACAAACTATGA 1929 41.42 MNSTTTLLKTTPTPFINLPKTRFSNQSQHKTLKKSHFQPISPIKIPRNPHFCTLKAYKKNPFHITTQAQQPTKDFSKRCDLDKIKVVVRFGVVVMGVLVLGVIRCQNVMAIMEGGSGIVDVKGFWNGPKFSQVLRVFREQGLILAGLLGLSAFFSMAETSITTLSPWKVRELAEKEGENGVFKLLRTDVTRFLTTILIGTTVVNIGATALFTEAATTVFGEAGVSAATGVMTVVVLLLTEITPKSIAVHNATAVARAVVRPVAWLSIVLYPVGRVVTFLSMGMLKILGLKAKSEPSVTEDELKLMLRVAELSGAIEEEEQDMIENVLEIKDTHVKEVMTPLVDVVAVDASATILDFHHLWVTHQYSRVPVFEQRIDNIVGIAYAMDLLDLVKKGEMLETAVVGEIAHKPAYFVPDSMLVWNLLREFRIRKVHMAVVLNEYGGTVGIVTLEDVVEEIVGEIFDENDSKEEIERKTGNIVKRADGVFDVDANTSVYQLSEDLEIILPEDHQYETVSGFICEAFGYIPRTGESIKVVLKKANKEDDDNDENKQETNSQDQKDTSQTFKLGILAGNCRKVNTVRFERINNNSAKEIKEAARIVPRFWKTKWKNDESAGSSDEERLYQDPPKTAISHDHILAENNKL 642
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Glco3g00905 642 SUPERFAMILY CBS-domain pair 321 460 IPR046342 -
Glco3g00905 642 MobiDBLite consensus disorder prediction 609 627 - -
Glco3g00905 642 FunFam Magnesium-cobalt efflux protein CorC 315 465 - -
Glco3g00905 642 MobiDBLite consensus disorder prediction 609 642 - -
Glco3g00905 642 SUPERFAMILY FAD-binding-transporter-associated domain-like 476 539 IPR036318 GO:0050660(InterPro)
Glco3g00905 642 SMART cbs-1 409 457 IPR000644 -
Glco3g00905 642 SMART cbs-1 343 392 IPR000644 -
Glco3g00905 642 Pfam Cyclin M transmembrane N-terminal domain 143 319 IPR002550 -
Glco3g00905 642 ProSiteProfiles CBS domain profile. 406 463 IPR000644 -
Glco3g00905 642 MobiDBLite consensus disorder prediction 539 560 - -
Glco3g00905 642 PANTHER HEMOLYSIN-RELATED 113 608 - -
Glco3g00905 642 Pfam Transporter associated domain 479 581 IPR005170 -
Glco3g00905 642 Gene3D - 313 468 IPR046342 -
Glco3g00905 642 ProSiteProfiles CBS domain profile. 338 399 IPR000644 -
Glco3g00905 642 ProSiteProfiles CNNM transmembrane domain profile. 133 319 IPR002550 -
Glco3g00905 642 Pfam CBS domain 334 391 IPR000644 -
Glco3g00905 642 Pfam CBS domain 402 457 IPR000644 -
Glco3g00905 642 CDD CBS-pair-CorC-HlyC-assoc 333 454 IPR044751 -
Glco3g00905 642 Gene3D - 473 566 IPR016169 -
Glco3g00905 642 SMART CorC-HlyC-2 478 585 IPR005170 -
Glco3g00905 642 MobiDBLite consensus disorder prediction 539 554 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Glco3g00905 K03699 magnesium and cobalt exporter, CNNM family
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Glco Glco-Chr3:51870914 Glco3g01909 Glco-Chr3:128335433 dispersed